Lstr025534.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_949128165.1
- Location
- OX421914.1:20412001-20413374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1e-05 0.0018 19.9 2.3 1 23 144 166 144 166 0.97 2 10 4.7e-06 0.00041 21.9 0.3 1 23 172 195 172 195 0.97 3 10 1e-06 8.8e-05 24.0 0.4 1 23 204 226 204 226 0.98 4 10 1.3e-05 0.0011 20.5 0.4 1 23 232 254 232 254 0.98 5 10 1.5e-05 0.0013 20.4 0.8 3 23 262 282 262 282 0.98 6 10 0.00038 0.034 15.9 3.2 1 23 288 310 288 310 0.98 7 10 1.5e-07 1.3e-05 26.6 0.9 1 23 316 339 316 339 0.98 8 10 0.098 8.7 8.3 1.6 2 23 370 392 369 392 0.93 9 10 0.065 5.7 8.9 0.1 1 17 398 416 398 423 0.85 10 10 0.00089 0.078 14.7 0.6 1 23 429 452 429 452 0.91
Sequence Information
- Coding Sequence
- ATGGATCAAAAAGTTTGTCGACTATGCTGCGCGAATGATGGCTcttcatatatatttaatgaCGAAAGCGGTGTATCTATTTCTGCTAAGATATTATATTGTTGCGCAAACATAAAAGTTTCCGAGGGCGACGGGTTGCCGACTCGTATTTGCGGCCCTTGCGAGGTTGAGCTGACCGCCTCCTATAACTTCGTGCTAAAATGCGAAGCCACAGACCAGATACTACGCTGCAGAACTGCCGAAGTCGATGAGAATGGCGACGATTGCAAGTTAAAACTCGAAGTGAAACAAGAAGACTGCGATGACCAGTATGAAGATGTGGTCGAACCTGAAACTTACCCATTTCTCGACTATGGTGAAGTTAAGAGAGAAGAGAAACCCAAGAGAGCGTATAAGAAGCGGGCGCGGCTGAAAGGGAAGAGCTCTTCTTGCAAGTGTAAAGAGTGTGGACGAGTTTGCGCCAGTCAGTCGGCACTCCTCATACATACTAGAGTACATTCCGGAGAGCGGCCGTACCAATGCCCTTCCTGTGACAAAAAGTATGCTGATAGAGGTGGCCTCAAAAGACATATAGAGAGAAATCATTATGGAAAGACGAGGGAGCGAAAATTCATGTGCGAAAACTGCGGAAAAGCATTTTACACGAAAACTGACGTAGCTGTTCATATGAGAACCCATACTGGAGAAACACCATATGCTTGTACTATTTGCCCTTCAAAATTCACACAGAGCAGCGCCATGCTACGGCACATCAAAACTCATTCATCCGAGAAGTCTCACGGCTGTGAATCTTGTGGCAAAATGTTTGGCactaaagaaaaattaaaacgccACATCATCACGCATTCTACTGAAAAACAGTACAGCTGTTCACTTTGTAATTctctatttaaatataaaaataatttgaagaAACATTTACGTTTACATGCAGAGCCAAACCGTTTCGTCTGCAACTACTGTGGCCGCACTTTCAATGTAAAAGGCAATCTTAAATTGCATATAAAAACACAGCATTCAGAAACGTCCGGCTTCTGTACAATCTGTTGTAAAAATGTGCCAAATATAGACACCCACATGTGGAGACATACAGGAGAACGGCCTCTGAAATGTGAGCTATGTACGAGTAGCTTTTACGAACTGAAAGCTTTAGCTCACCACATGAGCTTCAGACATAAGAATACAGACAAATACAAGTGTCCGATAGAAGGGTGCGGGATGACATTCCCTTCTCGACCAATGCTTGCATTCCACAATGCCAAATTGCATGACACTCGGATACCATTCCCTTGTGACCGATGCTCCAGAggtttctacagaaagaatGATCTTGCGAGACATAAGATAGGAACACATAAGGAAAGACTGACATAA
- Protein Sequence
- MDQKVCRLCCANDGSSYIFNDESGVSISAKILYCCANIKVSEGDGLPTRICGPCEVELTASYNFVLKCEATDQILRCRTAEVDENGDDCKLKLEVKQEDCDDQYEDVVEPETYPFLDYGEVKREEKPKRAYKKRARLKGKSSSCKCKECGRVCASQSALLIHTRVHSGERPYQCPSCDKKYADRGGLKRHIERNHYGKTRERKFMCENCGKAFYTKTDVAVHMRTHTGETPYACTICPSKFTQSSAMLRHIKTHSSEKSHGCESCGKMFGTKEKLKRHIITHSTEKQYSCSLCNSLFKYKNNLKKHLRLHAEPNRFVCNYCGRTFNVKGNLKLHIKTQHSETSGFCTICCKNVPNIDTHMWRHTGERPLKCELCTSSFYELKALAHHMSFRHKNTDKYKCPIEGCGMTFPSRPMLAFHNAKLHDTRIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659664;
- 90% Identity
- iTF_00654990;
- 80% Identity
- -