Eman013972.1
Basic Information
- Insect
- Ephialtes manifestator
- Gene Symbol
- Prdm1
- Assembly
- GCA_963970395.1
- Location
- OZ019970.1:31740705-31748064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5 6.7e+02 2.5 0.0 2 23 254 275 253 275 0.93 2 13 0.0025 0.47 12.4 4.6 3 23 284 305 283 305 0.97 3 13 1.3e-05 0.0024 19.6 0.6 2 23 467 488 466 488 0.97 4 13 0.0014 0.26 13.2 0.2 1 20 492 511 492 512 0.94 5 13 3.3e-05 0.0063 18.3 1.7 1 23 522 544 522 544 0.98 6 13 6.9e-05 0.013 17.3 5.6 1 23 573 595 573 595 0.97 7 13 4.1e-05 0.0078 18.0 1.6 3 23 618 638 616 638 0.97 8 13 0.36 67 5.6 3.1 1 23 643 665 643 665 0.97 9 13 0.0051 0.97 11.4 0.1 2 23 671 692 670 692 0.94 10 13 0.00058 0.11 14.4 7.0 1 23 697 720 697 720 0.96 11 13 0.0016 0.3 13.0 3.7 1 23 726 748 726 748 0.97 12 13 0.00035 0.065 15.1 6.2 1 23 754 777 754 777 0.97 13 13 0.053 10 8.2 4.7 1 23 782 805 782 805 0.95
Sequence Information
- Coding Sequence
- atGCCAACGCTGAAAAGGATATCATTGCTAACAAATGGAAAACCGGCAACTCACGACACTGGACAAAATAAGAAAAGCGAGACAGAAACTTACTTGTCAGCATGTAATGTTTGCGGTCAGAATCATGAGACAAATTCCTGCCAATTTCTACAAGACTTACATTAtgTCAAAGACACGCCTTTGTTGTCAAGAGCCAGACAAAGTCTGCCACAAAGTTTGGAGATCACAGGAATGGCTGATGGCTCTACAACAGTTATCGCCAAATGTAATTTTCAAACAGGAACTACTTTTGGTCCTGTGCAAGCAAAGCGGAATCAAACTATGAATCCTATGACCAACTTTCCTATAAAAGTCTTTGGCGATAGATCTGCGGAAAGTTATTATTTGGATTATTCCAACGAGGAGACTTCTAACTGGATGTGTTTCATCTCTCCAGCCTCCAGTGCTAAGGAACAGAATCTCGTGTGTTTTCAAGCTCAACAGGATATATTTTATACAGCTATGCGAGCTATTTCTGCAGGCGAGGAATTGCGGGTCTGGTATGCGCCATATTATGCACTCAGAATGAAGATGCCTGTTTTTAATACCGAATTTGCGAGCGTTGAGGCAAATTTCTCGGTAACTGAAGTCGAGGACACAATTATGCAGTCTGGGAATTGCAAAAAGGAGCAGGTGGAACTTTTGAACAATAATATTCAGAACCTCGCTGAACGTTTGCCAGCCGAACATTTGGGAGCCCGAGGTGATAAAACGAGTTGGAACTGTAGAATATGCTCAATAGTTATCACTTCAGTGATCGCGTACGCCAAACACTTAATGGAGCACTATAAACCGCTTTTGGGGGTTTTTTGTGACatttgtaacaaaaaatttcacagaacttCGGTTTTGCAGAAACACAAACGTGTTAAACATCCTGAGGTTATATCAAGCAACGACGTTGTTGGAATTCCTACGTCGGAAAATCAACAGCAACAAAATGCACAGACGATTCTTCTAAATATGAGCGATTCCGATGGCCAAACTTCGGAGGCAATGAAAGATATCCTCGAGAAATTTAAAGCCGGAAAAGCCATAACGGAAAGTAATTTGCTGTTGCCATCGATAGAGTCTGAAAAGGAAAATCAGAGCGAACTACCGCTGCTCGACACAAACTCGATAAACGTTAATGATCTCCTGCAAAATAACGGAACACTCATGGAGACTTCTTCGTTAAAATCAATCCTGGAAAATCAGTGCCTGAACATGAATCTCGGCCTCGGAAATATGACTGACTCTATACTCTCGGAAAACATTCCTGGCGTTGATTCAGTAAAGTTTAATGTTGAAGAATTGGCCTCCGAACTTTTGGATATCACGCCcgatgttgagaatattaatcgCCGAGTTGACAATCTTGAATGTGATATATGCGAGAAGAAATTCGAAAAAGCGGATTATCTCTATCGTCATTTGAGAAAACACACTGGAGAGTTTATCTGCCCTGTCTGTTTGACTGTATTTGCGAGGAAGGAAAATTTGGTATCTCACGTTTGTCCATCGCAGAAGACCGAGCACCGAAATTACGAATGTCTCTACTGCCAAAAGCCTTTCGTTCTTAAAAAATACCTGAAGCGTCATATGGTGAAGCACACAGAGTGGAATACCTGCAAATGGTGTCACAATCTTTTCTCCTGTCGTGCGGAACTGGAAGCTCACAAGTGCCAAGCCCCGAAACACGTTTGCTTGCAATGCGGCAAACGTTTCGTACATCGAGCGCATCTAAATCGTCACGCGAAATCTCACGCAGATCCTAAGCCCGTAATCAAGAGAATtaggaaaaaaagaattacagACAACAAACCCGTAATATGCGAAAAATGCGGCGATGTTTTTAAAACTTCTCACAGCTTGAAGCAACATCTGCGATCTCACGgGGAAAGAAAATTCGAGTGCGACGTTTGTCACAGCAGATTCCACAGAATAGGTGTGTTAAAACAGCACAAATCGATACACCAAAGTGTTCAGATTCCCTGCCAAGTTTGTGGAAAGAAACTAAAGAGCAAAAAAGCTTTGGGAGTTCACGTGCTTCTTCAtgggaataaaaaattccaatgcGAAAAGTGTGATAAAAGCTTCTTCCAAAAATGCAATTACCTCAAGCATTATAAACAAATGCATAGCGATAAAGTAACCCACAAGTGTCCACACTGCCCAACGCAATTCACCAGTGAGTTGAGCTTCAACAAACACGTGGAGAGCCACGTTAAGCCAGCTCAATACAATTGCTCGTCATGTCACAAAGTTTTTCATCGAgaATATCAGCTTAAACGTCACGTGCAGACGAATCACAGTGGAATTATTTTCCGTTGTCCTTATTGCAAAATGACTGCAAGATATCGACACAGTATGAGACGACATTTCGAAAGACAGCACAAAAGTCTCAATGAAGAATGGGATAAGCCCGGTTTTGTTAatgatttaattgaaaaaaccgCTTCCACTGTGCTGATCGAACAGGTGGTTCCGAAAAATGAGCAAAGCGGCGTCTTACAAGTGGCTTTCGGTGACATAAGTGCCGTAAAATATGGAGATCAAGATCAGGCTCAAGGCCAGATTCTGTCGGTCACTGGAATTGACGGTAATCAATTTGGCAATCAGACGCAAGTTTCGATACAAGAAAACGCGGATGAAATTGGACGCAGTTCATTGAATGGTCAAGAAGTTTTGCTTCAAGTACCGGAAATCGATCAAACAGGATCCTCGATCGAGGATACGGAACTTCAGTCAAATGAAGTCCCTCAGTTGAGTATAAGCGACACAGATGCGAATCTCGCAGAGTCCGTCCTGGGAAATGCGTACATATTCGGCGAGGATGGCGGTGACATCATGTTCTATGTCCTGGACAACGCACCCGTAATCACCGaatattaa
- Protein Sequence
- MPTLKRISLLTNGKPATHDTGQNKKSETETYLSACNVCGQNHETNSCQFLQDLHYVKDTPLLSRARQSLPQSLEITGMADGSTTVIAKCNFQTGTTFGPVQAKRNQTMNPMTNFPIKVFGDRSAESYYLDYSNEETSNWMCFISPASSAKEQNLVCFQAQQDIFYTAMRAISAGEELRVWYAPYYALRMKMPVFNTEFASVEANFSVTEVEDTIMQSGNCKKEQVELLNNNIQNLAERLPAEHLGARGDKTSWNCRICSIVITSVIAYAKHLMEHYKPLLGVFCDICNKKFHRTSVLQKHKRVKHPEVISSNDVVGIPTSENQQQQNAQTILLNMSDSDGQTSEAMKDILEKFKAGKAITESNLLLPSIESEKENQSELPLLDTNSINVNDLLQNNGTLMETSSLKSILENQCLNMNLGLGNMTDSILSENIPGVDSVKFNVEELASELLDITPDVENINRRVDNLECDICEKKFEKADYLYRHLRKHTGEFICPVCLTVFARKENLVSHVCPSQKTEHRNYECLYCQKPFVLKKYLKRHMVKHTEWNTCKWCHNLFSCRAELEAHKCQAPKHVCLQCGKRFVHRAHLNRHAKSHADPKPVIKRIRKKRITDNKPVICEKCGDVFKTSHSLKQHLRSHGERKFECDVCHSRFHRIGVLKQHKSIHQSVQIPCQVCGKKLKSKKALGVHVLLHGNKKFQCEKCDKSFFQKCNYLKHYKQMHSDKVTHKCPHCPTQFTSELSFNKHVESHVKPAQYNCSSCHKVFHREYQLKRHVQTNHSGIIFRCPYCKMTARYRHSMRRHFERQHKSLNEEWDKPGFVNDLIEKTASTVLIEQVVPKNEQSGVLQVAFGDISAVKYGDQDQAQGQILSVTGIDGNQFGNQTQVSIQENADEIGRSSLNGQEVLLQVPEIDQTGSSIEDTELQSNEVPQLSISDTDANLAESVLGNAYIFGEDGGDIMFYVLDNAPVITEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207599; iTF_01497715; iTF_00343384; iTF_00414554;
- 90% Identity
- -
- 80% Identity
- -