Pruf012103.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- prdm10_2
- Assembly
- GCA_963932165.1
- Location
- OZ010637.1:1697377-1704004[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.3 2.9e+02 2.6 0.0 2 23 252 273 251 273 0.94 2 14 0.00085 0.072 13.9 2.7 2 23 281 303 280 303 0.96 3 14 1.3e-05 0.0011 19.6 0.6 2 23 465 486 464 486 0.97 4 14 0.00063 0.054 14.3 0.2 1 20 490 509 490 510 0.94 5 14 1.3e-05 0.0011 19.6 2.0 1 23 520 542 520 542 0.98 6 14 4 3.5e+02 2.3 0.8 2 20 547 565 547 567 0.92 7 14 2.1e-05 0.0018 18.9 4.1 2 23 572 593 572 593 0.97 8 14 1.4e-05 0.0012 19.4 1.6 3 23 616 636 614 636 0.97 9 14 0.35 30 5.6 3.1 1 23 641 663 641 663 0.97 10 14 0.0051 0.43 11.4 0.1 2 23 669 690 668 690 0.94 11 14 0.00039 0.033 14.9 6.5 1 23 695 718 695 718 0.96 12 14 0.0016 0.14 13.0 3.7 1 23 724 746 724 746 0.97 13 14 0.0015 0.13 13.1 7.8 1 23 752 775 752 775 0.95 14 14 0.043 3.7 8.5 4.5 1 23 780 803 780 803 0.95
Sequence Information
- Coding Sequence
- atGCCGCAGCCGCCAATCGCGATTGGATCGGCGACGGGATCGGCGGGGGAGGTCGGGAGGAGCGAGAAAAGTGAGGTCGAACCTTACTCGTCAGcctgcTTCGTTTGCGGCCGGAAACACGAGACAAACGCCTGCCAATTTTTGCAGGAGTTGCATTAtGTCAAAGACAAACCTCTGTTGTCGAGAGCCAGGCAGACGTTGCCCGATTCTCTGGAGGTCACTAGAATGGCTGACGGTTCGACGACGGTGGTTGCCAAGTGtgattttccaccaggaaCAACTTTCGGTCCTCTGCAGGCGAAACGGGACCGAACGATGAATCCAATGACCAATTTTCCCATAAAAGTCTTTGGCGATGGATCGGAGGAGACTTTCCACCTGGATTATTCCAGCGAGGAGACATCCAACTGGATGTGCTTCGTCCCTCCAGCCACCGGCGCAGCGGAACAGAATCTCGTGTGCTTTCAGATTCAGCGGGATATTTTTTACGCGGCTATGCGAACGATTTCCGCGGGCGAGGAGCTGAGGGTTTGGTACGCGCCTTATTACGCTCTGAGGATGAAGATGCCGGTTTTTAACACGGAATTCGCGAGCGTCGAGGCGAATTTCGCGTTACCGGAGGTCGAGGAGGAAGCGAAACGGCCTGAGGACTGCAAAAAGCAACAGGTGGAAGTGTCGAatAATAACATTCAGGACCTGGCCGAGCGTTTGCCGGCCGAGCATCTTGGAGCTCGGGGCGACAAAACGAGCTGGAACTGCCGAATATGCTCGGTGGTCGTCGCCTCGGTGGTCGCGTACGCGAAGCACCTGATGGAGCACTACAAGCCGCTCCTCGGAGTTTACTGCGACATTTGCAACAAAAAGTTTCACAGAATTTCGGTCCTGCAGAAACACAAGCGCGTTAAGCACCCGGAGGGGATGCCGAGCGGCGACGTCGTTGGGATTCCCACGTCGGAAAACCAGCAGCAACAAAACGCGCAGACGATTTTGCTCAATATGAGCGACTCCGACGGCCAAACTTCGGAGGCGATGAAGGACATCCTCGAGAAATTCAAGGCCGGCCGAGCGATTACGGAGAGCAGTTTGCTGCTGCCGTCGATGGACGCCGAGAAGGAAAATCAGAACGAACTTCCGCTTCTCGACGCGAACTCGATAAACGTCAACGATTTGCTACAAAATAATGGGACGCTCATGGAAAGTTCGTCGCTGAAATCGATGCTGGAAAATCAGTGTCTGACGATGAATCTCGGCCTCGGAAACATGACGGACTCGATGCTCGCCGAAAACATCGCGGGCGTCGATCCCGTAAAATTCAACGTCGAGGAACTCGCGTCGGAACTCCTGGACATCGCGCCCGACGTCGAGAGCGTCGATCGTCGCGTCGACAATCTCGAGTGCGACATCTGCGAGAAGAAATTCGAGAAAGCCGACTATCTTTATCGACACCTCAGAAAACACACCGGCGAATTCATCTGTCCTGATTGTCTGACTGTGTTCGCGAGGAAGGAAAATTTGGTGTCGCACGTCTGTCCAGCGCAGAAAATCGAGCACCGACGCTACGAGTGTCTCTACTGCCAGAAACCCTTCGTGCTGAAGAAATACCTGAAGCGCCACATGCTGAAGCACACGGAGTGGAACACGTGCAAATGGTGCCGCAGTCTcttcggctcgcgcgcggagcTCGAGGCCCACAAGTGTCAGGCGCCGCGAAACGTTTGCTCGCAGTGCGGCAAGCGATTCGTTCACCGGGCGCATCTGAATCGCCACGCGAAGTCGCACGCGGAGCCGAAACCCGCGATCAAGAGGGTcaggaaaaaaacgatttccgGCGAGAAACCCGTGATCTGCGAAAAATGCGGCGACGTCTTCAAGAATTCGCACAACTTGAAACAACATCTGCGATCTCACGgagaaagaaaattcgAGTGCGATGTTTGTCACAGCCGATTCCACCGAATCGGAGTCCTGAAGCAGCACAAATCGATCCACCAGAGTGTTCAGATTCCCTGCCAGGTCTGCGGGAAGAAACTCAAGAGCAAAAAAGCGCTGGGTGTTCATGTGCTTTTGCACGGCAACAAGAAGTTCCAGTGCGAAAAGTGCGACAAAAGCTTCTTCCAAAAGTGCAATTACCTAAAGCACTACAAGCAAATTCACAGCGACAAAGTAACCCACAAGTGTCCGCACTGCCCGACGCAATTCACCAGCGAGCTGAGCTTCAACAAACACGTGGAGAGTCACGTGAAACCGGCCCAGCACAATTGTTCCTCCTGCCACAAGGTTTTTCACCGGGAATATCAGCTTAAACGTCACATTCAGTCGAATCACAGCGGAATAATATTTCGCTGTCCCTACTGCAAAATGTCGGCGCGTTATCGGCACAGCATGAGGCGACATTTCGAGAGGCAGCACAAGAGCCTCAGCGAGGAGTGGGACAAGCCGGGTTTCGTCAACGATCTGATCGAAAAAATTTCGCCCGCCGTGCTGATCGAGCAGGTGGTGCCGAAGAACGAGGAGAGCGGCGTCCTGCGTGTGGCTTTCGAGGATGTAAACGCCGGGGAATACGAGGATCAGGACGAGGCTCGGGGGCTGATTCTCTCGGTCGCCGGAATCGACGGGAATGAGTTCGGCGATCAGACGGAGGTTCAGGAAAACGTGGAGGAGATCGAACGGGATTCGCTGAACGGTCAAGAAGTTCTGCTCCAAGTCTCGAAGATCGACGAAGCGGGCTCGACGATCGCGGCCGCGGCGCTCCAGCCGAGTGAAGTCCCGCAGCTGAGCATCAGCGACACCGACGCTCATCTCGCCGAATCCGTCCTGGGAAACGCCTACATATTCGGCGAGGACGGCGGTGACATCATGTTCTACGTCCTGGACAACGCGCCCGTCATCGCCgagtactga
- Protein Sequence
- MPQPPIAIGSATGSAGEVGRSEKSEVEPYSSACFVCGRKHETNACQFLQELHYVKDKPLLSRARQTLPDSLEVTRMADGSTTVVAKCDFPPGTTFGPLQAKRDRTMNPMTNFPIKVFGDGSEETFHLDYSSEETSNWMCFVPPATGAAEQNLVCFQIQRDIFYAAMRTISAGEELRVWYAPYYALRMKMPVFNTEFASVEANFALPEVEEEAKRPEDCKKQQVEVSNNNIQDLAERLPAEHLGARGDKTSWNCRICSVVVASVVAYAKHLMEHYKPLLGVYCDICNKKFHRISVLQKHKRVKHPEGMPSGDVVGIPTSENQQQQNAQTILLNMSDSDGQTSEAMKDILEKFKAGRAITESSLLLPSMDAEKENQNELPLLDANSINVNDLLQNNGTLMESSSLKSMLENQCLTMNLGLGNMTDSMLAENIAGVDPVKFNVEELASELLDIAPDVESVDRRVDNLECDICEKKFEKADYLYRHLRKHTGEFICPDCLTVFARKENLVSHVCPAQKIEHRRYECLYCQKPFVLKKYLKRHMLKHTEWNTCKWCRSLFGSRAELEAHKCQAPRNVCSQCGKRFVHRAHLNRHAKSHAEPKPAIKRVRKKTISGEKPVICEKCGDVFKNSHNLKQHLRSHGERKFECDVCHSRFHRIGVLKQHKSIHQSVQIPCQVCGKKLKSKKALGVHVLLHGNKKFQCEKCDKSFFQKCNYLKHYKQIHSDKVTHKCPHCPTQFTSELSFNKHVESHVKPAQHNCSSCHKVFHREYQLKRHIQSNHSGIIFRCPYCKMSARYRHSMRRHFERQHKSLSEEWDKPGFVNDLIEKISPAVLIEQVVPKNEESGVLRVAFEDVNAGEYEDQDEARGLILSVAGIDGNEFGDQTEVQENVEEIERDSLNGQEVLLQVSKIDEAGSTIAAAALQPSEVPQLSISDTDAHLAESVLGNAYIFGEDGGDIMFYVLDNAPVIAEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653089;
- 90% Identity
- -
- 80% Identity
- -