Cinc020370.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- Prdm15
- Assembly
- GCA_947507545.1
- Location
- OX382173.1:15886866-15891945[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 2e+02 3.1 0.0 2 23 255 276 254 276 0.94 2 13 0.002 0.22 12.4 4.6 3 23 285 306 284 306 0.97 3 13 2.4e-06 0.00025 21.6 0.4 3 23 470 490 468 490 0.97 4 13 0.0012 0.13 13.1 0.1 1 21 494 514 494 515 0.93 5 13 1.1e-05 0.0012 19.5 1.7 1 23 524 546 524 546 0.98 6 13 2e-05 0.0021 18.8 5.9 1 23 575 597 575 597 0.97 7 13 0.00096 0.1 13.4 1.2 3 23 620 640 618 640 0.97 8 13 0.2 22 6.1 2.3 1 23 645 667 645 667 0.96 9 13 0.00048 0.051 14.4 0.1 2 23 673 694 672 694 0.95 10 13 0.00032 0.034 14.9 6.5 1 23 699 722 699 722 0.96 11 13 0.0013 0.14 13.0 3.7 1 23 728 750 728 750 0.97 12 13 0.00028 0.03 15.1 6.2 1 23 756 779 756 779 0.97 13 13 0.043 4.6 8.2 4.7 1 23 784 807 784 807 0.95
Sequence Information
- Coding Sequence
- ATGACAACCTTGAAGAAGATGCCCTCGTTGCTAACCAACGAAAAATCAGCTAGTCACGACACTCAACAGAATAAGAAAAGCGAGACCGAAACTTACTTGTCAGCATGCAATGTTTGCGGCCACAAGCACGAGGCAAATTGTTGTCCATTTTTGGAGAACTTACATTATGTCAAAGACACTCCTGTGTTGTCGAGAGCCAGGCAAAGCCTGCCGAAGAATTTGGAGATCACGCGAATGGCTGATGGCTCTACAACAGTGGTTGCCAAATGTGATCTTCAGGCGTTCACTACTTTTGGTCCCCTGCAAGCAAAGCGCGATCAAACTATGAATCCGATGACCAGTTTTCCTGTTAAAGTCTTTGGCGATGGACATGGCGAAAGTTACCATTTGGATTATTCCAACGAGGAGACTTCCAACTGGATGTGCTTTATACCTCCAGCTTCGAGTGCCAGGGAACAGAATCTCGTGTGTTTTCAGGCTCAACAGGATATATTTTATACAGCTATGCGAGCCATTTCTGCAGGCGAGGAACTGAGAGTCTGGTATGCACCGTATTACGCTCTCAGAATGAAGATGCCTCTTTTTAATACCGAATTCGCAAAAGTCGAAGCGATTTCCTCGGCACCGGAAGTTGAAGAGACGTTTACGCAGTCTCAGGATTGCAAAGAGGAACAGCCAGAACTTTTGAAGAATAATATTCAGGAGCTAGCCGAACGTTTGCCAGCTGAGCATTTGGGGGCCCGAGGCGATAAAACCAGTTGGGAGTGTAGAATATGCTCGATAGTTATTACTTCAGTGATCGCCTACGCAAAACACTTGATGGAGCATTACAAACCGCTTTTGGGGGTCTTCTGTGATATTTGCAACAAAAAATTTCACAGAACTTCGGTATTGCAGAAACACAAACGTGTTAAACATCCGGAAGTTATATCGAGCACCGACGTTGTCGGAATTCCTACGTCGCAAAGTCAACAGCAACAAAATGCACAGACGATTCTCCTAAATATGAGCGATTCCGATGGCCAAACTTCGGAGACGATGAAAGACATCCTCGAGAAATTTAAAGCCGGAAAGGCGATAACGGAAAGTGGTTTACTGCTGCCGTCGATAGAACCTGAAAAGGAAAATCAAAGCGAACTTCCGCTGCTCGATGGAAACTCCATAAACGTTAACGATCTCTTGCAAAATAATGTAACACTCATGGAGACATCTTCGTTAAAATCAATTCTGGAAAATCAGTGCCTTAACATTAATCTCGGCCTCGGAAATATCACAGACTCTATGCTGTCGGAAAACATTACTGGCGTTGATTCTGTAAAGTTTAATGTTGAAGAATTAGCCTCCGAGCTGCTGGATAATATCACGCCTGATGTTGAAAATATCAATCGCCGCATTGACAATCTCGCGTGTGATATATGCGGAAAAAAATTCGAAAAAGCTGATTATCTTTATCGCCACTTAAGGAAACACACAGGAGAATTTATTTGCCCTGTCTGTCTCATCGTATTTGCGAGGAAGGAAAACTTGGTATCTCACGTTTGTTCATCTCAGAAGACGAAGCACCGAAATTACGAGTGTCTGTACTGCCAAAAGCCCTTCGTTCTAAAAAAATACCTGAAGCGTCATATGATAAAGCACACAGAGTGGAATACATGCAAATGGTGCCACAGTCTTTTCTCCTGTCGTGCGGACCTTGAAGCTCACAAGTGCCAAGCCCCAAAACACGTTTGCTCGCAGTGCGGCAAACGTTTCGTTCACCGGGCGCATCTCAATCGACACGCGAAATCTCACGCAGATCCTAAGCCTGTTATCAAGAGGATTAGAAAAAAGACAATCTCTGACACCAAACCCGTGATTTGCGACAAGTGCGGCGATGTCTTGAAAAATTCTCACAGCTTAAAGCAACACTTGAGATCTCACGGGGAAAGAAAATTCGAATGCGACGTTTGTCACAGCAGATTCCACAGAATAGGTGTGTTAAAACAGCACAAAGCAATACACCAGAGTATTCAGATTCCCTGCCAAATTTGCGGGAAGAAACTAAAGAGCAAAAAAGCTTTGGCAGTTCACGTGCTCCTTCATGGGAATAAAAAATTCCAATGCGAAAAATGTGATAAAAGCTTCTTCCAAAAATGCAATTACCTCAAGCATTACAAACAGATTCACAGCGATAAAGTGACGCACAAGTGTCCGCATTGCCCAACACAATTTACCAGCGAGCTGAGCTTCAATAAACACGTGGAGAGTCACGTTAAGCCAGCTCAGTACAATTGTTCGTCTTGCCATAAAGTTTTTCATCGAGAATATCAACTGAAACGCCACGTGCAAACAAATCACAGTGGCATTATTTTCCGTTGTCCTTATTGCAAAATGACCGCGAGATATCGACATAGTATGAGACGACATTTCGAAAGACAGCACAAGAGTCTCAGCGAAGAATGGGACAGGCCGGGTTTCGTCAATGATTTTATCGAAAAAATCGCTCCCACGGTGATGATCGAACAAGTGGTTCCGAAGAACGAGCCGAGCGGCGTTTTACAAGTGGCGTTCGGTGAATATGGAGATCAGCATCTCAAGGCGCAACGACAGATTCTCGCGATTACGGAAATCGACGTCGATGAGTTCGGTAATCCGGGACAACTACCGATTCAACAAAATGCCGATGAAATTCGGCAGAACTCTTTGGATGGTCAAGAAGTTTTGCTTCAAATCTCGGAGATCGATCAAACGGGATCTACGATCGAAGACACGAAACTTCAGCCAAGTCAAATTCCTCAGTTGAGTATAAGCGACGCGGATGCGAACCTTGCGGAGTCCGTTTTGGGAAATACGTACATATTCGGCGAGGATGGCGGTGACATCATGTTCTATGTCCTGGACAACGCGCCCGTAATCACCGAATATTAA
- Protein Sequence
- MTTLKKMPSLLTNEKSASHDTQQNKKSETETYLSACNVCGHKHEANCCPFLENLHYVKDTPVLSRARQSLPKNLEITRMADGSTTVVAKCDLQAFTTFGPLQAKRDQTMNPMTSFPVKVFGDGHGESYHLDYSNEETSNWMCFIPPASSAREQNLVCFQAQQDIFYTAMRAISAGEELRVWYAPYYALRMKMPLFNTEFAKVEAISSAPEVEETFTQSQDCKEEQPELLKNNIQELAERLPAEHLGARGDKTSWECRICSIVITSVIAYAKHLMEHYKPLLGVFCDICNKKFHRTSVLQKHKRVKHPEVISSTDVVGIPTSQSQQQQNAQTILLNMSDSDGQTSETMKDILEKFKAGKAITESGLLLPSIEPEKENQSELPLLDGNSINVNDLLQNNVTLMETSSLKSILENQCLNINLGLGNITDSMLSENITGVDSVKFNVEELASELLDNITPDVENINRRIDNLACDICGKKFEKADYLYRHLRKHTGEFICPVCLIVFARKENLVSHVCSSQKTKHRNYECLYCQKPFVLKKYLKRHMIKHTEWNTCKWCHSLFSCRADLEAHKCQAPKHVCSQCGKRFVHRAHLNRHAKSHADPKPVIKRIRKKTISDTKPVICDKCGDVLKNSHSLKQHLRSHGERKFECDVCHSRFHRIGVLKQHKAIHQSIQIPCQICGKKLKSKKALAVHVLLHGNKKFQCEKCDKSFFQKCNYLKHYKQIHSDKVTHKCPHCPTQFTSELSFNKHVESHVKPAQYNCSSCHKVFHREYQLKRHVQTNHSGIIFRCPYCKMTARYRHSMRRHFERQHKSLSEEWDRPGFVNDFIEKIAPTVMIEQVVPKNEPSGVLQVAFGEYGDQHLKAQRQILAITEIDVDEFGNPGQLPIQQNADEIRQNSLDGQEVLLQISEIDQTGSTIEDTKLQPSQIPQLSISDADANLAESVLGNTYIFGEDGGDIMFYVLDNAPVITEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653089;
- 90% Identity
- -
- 80% Identity
- -