Ecoc018872.2
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- bab1
- Assembly
- GCA_958510875.1
- Location
- OY294067.1:270879763-270897553[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.003 0.7 11.4 0.0 20 35 4 20 1 25 0.86 2 2 2.3e-16 5.4e-14 53.4 0.0 1 43 134 177 134 179 0.95
Sequence Information
- Coding Sequence
- ATGCGTTTCACCCAAGCTTCAGCACGTTTTGGCATTCCGAAAGGAACCTTATACGATAATATCCTAGGAAAATCGAAACGTATGGCCGTATTAGAAGAAGCCGGTTTGACGCCGTTAGAAGAAAGCGCCGTTTTGGAATTCTGCTGTGACGTGTCTGTATCACCATATAATAGACGTACCAAAAAATCCCTTAAATCTGTTTTGAGTTTCGTCGAGAAACTGAGGCGAACACGCGATCCGGAATTTAAATTCACAGGTTTATCTGGTTTTAGGTGGTGGTGGGCTTTTTCAGACAGCTACCAGTACCAGTTACAATCCATGTGGCAGAAATGTTGGAACACAAATCAAAGTCTTGTACATAATCTGCGCTTCCGAGAAAGAGGACCATTGAAATCATGGCGACCCGAAACAATGGCAGAAGCAATATTTTCTGTGCTGAAAGAGGGACTGTCCTTATCACAGGCGGCCAGGAAATACGACATACCCTATCCCACATTCGTTCTATATGCCAACCGAGTACACAATATGCTAGGACCTTCAGCTGATGGTGGATCAGATCTTCGGCCAAAAGGAAGAGGAAGACCACAACGTATTCTTCTTGGCGTATGGCCCGACGAACACATCCGAGGAGTGATAAGAGCTGTAGTTTTTAGAGATTCACATCATATCAAAGAAGAACCTCATCTTTCATACCCTCGGATACATGATGGTGTAAATATCcagaattatcaaaacaattcatGTAGCAACGGATCAGATCCAAATGTGTCACCGGGAGCAGCCGCAGCAGCAGCTGTAGCCGCAGTTGCCCAAGGCTTAAGACAACAGATGTGCAGTATGGTCGCAGCGGCCCAACATCAAAATTCCACTCACGACACCAACCCAGTAGCAAGTCTTGTCAACTCTTTGGCGTTGGCAGGTCATTGCGGATCCATGCAAAGTAACGGCGCGCCCCCTATGAGTATGAGTCATATAGCTTCATTAAGAAGTTTAAGCAGTCCAGCGGGTAGTATCCAAGACCTGCGAATAAGTCCTGCAGAATCAGCACTGGAAAGTCCCATATCTTCCCCACTAGGCTTAACAGTTTCTAGTACCATGGAACCCACTATCAATATCAACATGGGAAACAGTATGGATGTCGGTATAGGTGTATCGGGAATGACTTATAAACCGGCGAGGTCGTTCACGTCTCCAAGACCCGAGAATCTCTTCCAAGAGGATATCGATGAACTGGTAAAACCAATACATGCTTCCACCCCCCATTCACGAGACTCGATGGCTATCAAAATAGAGCCGTTAACAGAGTGTCGAGGCGAATGA
- Protein Sequence
- MRFTQASARFGIPKGTLYDNILGKSKRMAVLEEAGLTPLEESAVLEFCCDVSVSPYNRRTKKSLKSVLSFVEKLRRTRDPEFKFTGLSGFRWWWAFSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHHIKEEPHLSYPRIHDGVNIQNYQNNSCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQNSTHDTNPVASLVNSLALAGHCGSMQSNGAPPMSMSHIASLRSLSSPAGSIQDLRISPAESALESPISSPLGLTVSSTMEPTININMGNSMDVGIGVSGMTYKPARSFTSPRPENLFQEDIDELVKPIHASTPHSRDSMAIKIEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00395175;
- 90% Identity
- iTF_00078306;
- 80% Identity
- -