Eonu040577.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032067.1:17114755-17117781[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 3.2e+03 -0.4 0.1 27 44 52 69 40 72 0.78 2 13 0.83 1.2e+04 -2.3 0.1 27 44 99 116 97 124 0.76 3 13 0.012 1.7e+02 3.7 0.1 26 48 126 148 121 153 0.87 4 13 0.023 3.3e+02 2.7 0.1 21 48 150 177 146 182 0.80 5 13 0.062 9e+02 1.3 0.1 21 48 179 206 175 210 0.87 6 13 0.015 2.3e+02 3.3 0.5 25 48 213 236 207 240 0.79 7 13 3.3e-05 0.48 11.8 1.5 20 48 237 265 221 270 0.82 8 13 1.1e-05 0.17 13.3 0.1 22 48 269 295 266 301 0.91 9 13 0.21 3.1e+03 -0.4 0.0 26 48 302 324 296 329 0.83 10 13 0.063 9.2e+02 1.3 0.3 17 48 322 353 316 356 0.82 11 13 1.6e-05 0.23 12.8 0.2 17 48 519 550 505 552 0.81 12 13 0.00067 9.8 7.6 0.1 20 48 551 579 547 585 0.88 13 13 0.16 2.3e+03 0.0 0.1 18 48 578 608 576 612 0.85
Sequence Information
- Coding Sequence
- ATGGATACATTAGAAGATGAGGATTGCATTAGTGGAACAAGTGAGATGAAAGAAGAAGAATATATTGAAGTTGAACCCATCATACCAGACTTGGATTATGAGaCAGATGAAGAGAGTTCCAACCCAAGCAATCCTGCTAAAAACAgctaCCAGTGCACCAAATGCAGCAAGACCTACCCCACCTCATACAATTTGAAGAGACATAAAAAGATATGTCAAGGTCAAGATATGAAAGGAATAGCAGTGGAAAGTCAAATTCTCACGAGAATAATAGACGGTATAAAAATGCACTCATGTCAGGTGTGCCGGTATAAGAATAAGGACCGTCCGCAGGTCAGAAGGCACCTTGTGACTCACACGGGGATGAAAGCTTACAAGTGTACAGTGTGCGACTACGCCTGCAGACTGTCCGGTAACCTCAAGACACACATGATGACAAACCACACTGGGGAGAAACCGTTAAGTTGTAGCCAGTGCGAATACAAGACAGTTTGGAGCCGggatttaaaaacacatatacTAACAAAACACACAGAGGAGAAACCTTACGCGTGCGTTcaatgtgattttaaaacagCACGAAGCGGATCGTTAAGGACACACATCCAGGAACAGCACACAACAATGGAGAAACGTTACTCCTGCGTTTATTGCGATTATAAGGCTAAAAGGCAGAGCCACCTGAGGTCACACTTACAGGTGAAACACACAGGTGAGAAAGCTTACGCTTGTCTTCTCTGTAGTTTTAGGACAACGCAGAGTAGAAACTTGAAGACTCATATCAAGCTGAAACACACAGATAACAACAAACCTTTTTCCTGTGACCTGTGTGATTATAAGGCTACGCAGAGTAGGCACTTGAAGAGACATATGCAAGTGAAACACACAGAAGAGGATTATATCTTCTGTGCTTtttgtgagtttaaaacatCACAAACGATTGACTTGAGTAGACATATCCAGTCAAAACACCCGGATGAGAAACCTTTCTCTTGTGACCATTGTGATTATAAGGCGAAAAGGCGGACGCACTTAAAGGTGCATATGCAGGTGAAACACGCAAATGAGGAATCTAACCTCTTTGATAACAATACACAAAGCAATGACTTTATGTTACATATCGAGTCTGAAGAGATAGATGATAAATCTAACCTCTGTGATGATAACACAGATGATAAATCTAACTTCTGTGATAATAACACAGATGGGAAATCTAACCTCTGTGATGATAACACAGATGATAAATCTAACTTCTGTGATAATAACACGGATGGGAAATCTAACCTCTGTGATAATAACACAGATGATAAATCTAACCTCTGTGATAATAACACAGATGGGAAATCTAATCTTTGTGATAATAACACAGATGGGAAATCTAACTTCTGTGATAATAACACGGATGGGAAATCTAACCTCTCTGATAATAATACATCACAAAGCAATGACTTGACGTTACAAATCGAGTCGAAAGATCCGAAAGAGAAAATTTTCCCGTGTAAACACTGCAGTTACAAGGCGAAGAGACAAACTCACTTAAAGTTACATATCCAGGCCAAGCACACAGGCGAGAAACCTTACGCCTGTGAACTTTGCGATTATACGACCGCACAAAGTAGTAATTTGAAAAGACATATCCGCGGTAACCACACAAATGAAAGACCTTTCGCTTGCGATATCTGTGATTTCAAGACCGCATGTAGCAGCGACTTGAAGCGACACGTACGCAAGAAGCACACAGATGAAAAACCGTACTTCTGTGACCACTGCGATCACGTTACGGGTGAACAGAGTTGTCTTGGCGAGCATTTGAAGCAAAAACACCCGGACATACCGATAATTGAACATGACTGA
- Protein Sequence
- MDTLEDEDCISGTSEMKEEEYIEVEPIIPDLDYETDEESSNPSNPAKNSYQCTKCSKTYPTSYNLKRHKKICQGQDMKGIAVESQILTRIIDGIKMHSCQVCRYKNKDRPQVRRHLVTHTGMKAYKCTVCDYACRLSGNLKTHMMTNHTGEKPLSCSQCEYKTVWSRDLKTHILTKHTEEKPYACVQCDFKTARSGSLRTHIQEQHTTMEKRYSCVYCDYKAKRQSHLRSHLQVKHTGEKAYACLLCSFRTTQSRNLKTHIKLKHTDNNKPFSCDLCDYKATQSRHLKRHMQVKHTEEDYIFCAFCEFKTSQTIDLSRHIQSKHPDEKPFSCDHCDYKAKRRTHLKVHMQVKHANEESNLFDNNTQSNDFMLHIESEEIDDKSNLCDDNTDDKSNFCDNNTDGKSNLCDDNTDDKSNFCDNNTDGKSNLCDNNTDDKSNLCDNNTDGKSNLCDNNTDGKSNFCDNNTDGKSNLSDNNTSQSNDLTLQIESKDPKEKIFPCKHCSYKAKRQTHLKLHIQAKHTGEKPYACELCDYTTAQSSNLKRHIRGNHTNERPFACDICDFKTACSSDLKRHVRKKHTDEKPYFCDHCDHVTGEQSCLGEHLKQKHPDIPIIEHD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00645284;
- 90% Identity
- iTF_00645284;
- 80% Identity
- iTF_00645284;