Basic Information

Insect: Empoasca onukii
Gene Symbol: -
Assembly: GCA_018831715.1
Location: CM032067.1:17114755-17117781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.3e-06 0.00083 20.9 2.0 1 21 50 70 50 71 0.95

2 14 2.7 2.6e+02 3.6 2.5 1 23 97 119 97 119 0.96

3 14 1.7e-05 0.0017 20.0 2.2 1 23 125 148 125 148 0.98

4 14 0.32 32 6.5 0.7 2 23 155 177 154 177 0.95

5 14 0.0034 0.34 12.7 0.3 1 23 183 206 183 206 0.95

6 14 0.00022 0.022 16.4 3.0 1 23 213 236 213 236 0.97

7 14 0.0054 0.53 12.1 1.8 1 23 242 265 242 265 0.95

8 14 0.00014 0.014 17.0 3.0 1 23 272 295 272 295 0.97

9 14 0.22 22 7.0 0.7 3 23 303 324 301 324 0.95

10 14 0.00047 0.047 15.4 5.2 1 23 330 353 330 353 0.97

11 14 0.0072 0.72 11.7 4.9 1 23 498 521 498 521 0.95

12 14 3.7e-06 0.00037 22.0 0.3 1 23 527 550 527 550 0.96

13 14 0.017 1.7 10.5 2.4 1 23 556 579 556 579 0.96

14 14 1.4 1.4e+02 4.4 4.8 1 23 585 608 585 608 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.3e-06	0.00083	20.9	2.0	1	21	50	70	50	71	0.95
2	14	2.7	2.6e+02	3.6	2.5	1	23	97	119	97	119	0.96
3	14	1.7e-05	0.0017	20.0	2.2	1	23	125	148	125	148	0.98
4	14	0.32	32	6.5	0.7	2	23	155	177	154	177	0.95
5	14	0.0034	0.34	12.7	0.3	1	23	183	206	183	206	0.95
6	14	0.00022	0.022	16.4	3.0	1	23	213	236	213	236	0.97
7	14	0.0054	0.53	12.1	1.8	1	23	242	265	242	265	0.95
8	14	0.00014	0.014	17.0	3.0	1	23	272	295	272	295	0.97
9	14	0.22	22	7.0	0.7	3	23	303	324	301	324	0.95
10	14	0.00047	0.047	15.4	5.2	1	23	330	353	330	353	0.97
11	14	0.0072	0.72	11.7	4.9	1	23	498	521	498	521	0.95
12	14	3.7e-06	0.00037	22.0	0.3	1	23	527	550	527	550	0.96
13	14	0.017	1.7	10.5	2.4	1	23	556	579	556	579	0.96
14	14	1.4	1.4e+02	4.4	4.8	1	23	585	608	585	608	0.95

Sequence Information

Coding Sequence: ATGGATACATTAGAAGATGAGGATTGCATTAGTGGAACAAGTGAGATGAAAGAAGAAGAATATATTGAAGTTGAACCCATCATACCAGACTTGGATTATGAGaCAGATGAAGAGAGTTCCAACCCAAGCAATCCTGCTAAAAACAgctaCCAGTGCACCAAATGCAGCAAGACCTACCCCACCTCATACAATTTGAAGAGACATAAAAAGATATGTCAAGGTCAAGATATGAAAGGAATAGCAGTGGAAAGTCAAATTCTCACGAGAATAATAGACGGTATAAAAATGCACTCATGTCAGGTGTGCCGGTATAAGAATAAGGACCGTCCGCAGGTCAGAAGGCACCTTGTGACTCACACGGGGATGAAAGCTTACAAGTGTACAGTGTGCGACTACGCCTGCAGACTGTCCGGTAACCTCAAGACACACATGATGACAAACCACACTGGGGAGAAACCGTTAAGTTGTAGCCAGTGCGAATACAAGACAGTTTGGAGCCGggatttaaaaacacatatacTAACAAAACACACAGAGGAGAAACCTTACGCGTGCGTTcaatgtgattttaaaacagCACGAAGCGGATCGTTAAGGACACACATCCAGGAACAGCACACAACAATGGAGAAACGTTACTCCTGCGTTTATTGCGATTATAAGGCTAAAAGGCAGAGCCACCTGAGGTCACACTTACAGGTGAAACACACAGGTGAGAAAGCTTACGCTTGTCTTCTCTGTAGTTTTAGGACAACGCAGAGTAGAAACTTGAAGACTCATATCAAGCTGAAACACACAGATAACAACAAACCTTTTTCCTGTGACCTGTGTGATTATAAGGCTACGCAGAGTAGGCACTTGAAGAGACATATGCAAGTGAAACACACAGAAGAGGATTATATCTTCTGTGCTTtttgtgagtttaaaacatCACAAACGATTGACTTGAGTAGACATATCCAGTCAAAACACCCGGATGAGAAACCTTTCTCTTGTGACCATTGTGATTATAAGGCGAAAAGGCGGACGCACTTAAAGGTGCATATGCAGGTGAAACACGCAAATGAGGAATCTAACCTCTTTGATAACAATACACAAAGCAATGACTTTATGTTACATATCGAGTCTGAAGAGATAGATGATAAATCTAACCTCTGTGATGATAACACAGATGATAAATCTAACTTCTGTGATAATAACACAGATGGGAAATCTAACCTCTGTGATGATAACACAGATGATAAATCTAACTTCTGTGATAATAACACGGATGGGAAATCTAACCTCTGTGATAATAACACAGATGATAAATCTAACCTCTGTGATAATAACACAGATGGGAAATCTAATCTTTGTGATAATAACACAGATGGGAAATCTAACTTCTGTGATAATAACACGGATGGGAAATCTAACCTCTCTGATAATAATACATCACAAAGCAATGACTTGACGTTACAAATCGAGTCGAAAGATCCGAAAGAGAAAATTTTCCCGTGTAAACACTGCAGTTACAAGGCGAAGAGACAAACTCACTTAAAGTTACATATCCAGGCCAAGCACACAGGCGAGAAACCTTACGCCTGTGAACTTTGCGATTATACGACCGCACAAAGTAGTAATTTGAAAAGACATATCCGCGGTAACCACACAAATGAAAGACCTTTCGCTTGCGATATCTGTGATTTCAAGACCGCATGTAGCAGCGACTTGAAGCGACACGTACGCAAGAAGCACACAGATGAAAAACCGTACTTCTGTGACCACTGCGATCACGTTACGGGTGAACAGAGTTGTCTTGGCGAGCATTTGAAGCAAAAACACCCGGACATACCGATAATTGAACATGACTGA
Protein Sequence: MDTLEDEDCISGTSEMKEEEYIEVEPIIPDLDYETDEESSNPSNPAKNSYQCTKCSKTYPTSYNLKRHKKICQGQDMKGIAVESQILTRIIDGIKMHSCQVCRYKNKDRPQVRRHLVTHTGMKAYKCTVCDYACRLSGNLKTHMMTNHTGEKPLSCSQCEYKTVWSRDLKTHILTKHTEEKPYACVQCDFKTARSGSLRTHIQEQHTTMEKRYSCVYCDYKAKRQSHLRSHLQVKHTGEKAYACLLCSFRTTQSRNLKTHIKLKHTDNNKPFSCDLCDYKATQSRHLKRHMQVKHTEEDYIFCAFCEFKTSQTIDLSRHIQSKHPDEKPFSCDHCDYKAKRRTHLKVHMQVKHANEESNLFDNNTQSNDFMLHIESEEIDDKSNLCDDNTDDKSNFCDNNTDGKSNLCDDNTDDKSNFCDNNTDGKSNLCDNNTDDKSNLCDNNTDGKSNLCDNNTDGKSNFCDNNTDGKSNLSDNNTSQSNDLTLQIESKDPKEKIFPCKHCSYKAKRQTHLKLHIQAKHTGEKPYACELCDYTTAQSSNLKRHIRGNHTNERPFACDICDFKTACSSDLKRHVRKKHTDEKPYFCDHCDHVTGEQSCLGEHLKQKHPDIPIIEHD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00645631;
90% Identity: iTF_00645631;
80% Identity: iTF_00645631;