Este019897.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457087.1:54688423-54690360[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.33 3.4e+03 -1.0 0.0 28 52 284 308 280 310 0.70 2 6 0.00094 10 7.2 0.0 23 47 307 331 300 336 0.84 3 6 0.0085 90 4.1 0.1 21 44 333 356 331 360 0.90 4 6 0.00056 6 7.9 0.0 21 48 361 388 356 391 0.89 5 6 0.00064 6.8 7.7 0.0 26 48 399 420 393 425 0.83 6 6 0.014 1.4e+02 3.5 0.1 26 46 483 503 477 512 0.85
Sequence Information
- Coding Sequence
- atgaatattaaagtgGAAAAGGATATTTGTCGAGTATGTTTGAAATCGGATAGTGGATGTTTGAATATTGCAAATACAGAACTagttcaaaaatttcaatactCAACACAATTAAAGattaataaaaatgatggtttaccaatgtttttttgtaatcatTGTACAGCACGTTTAAAAATTGCATATGATTTTCGTAAATTAAGTATTGAATCGGATACACAAATGCGTACATTccttacaaaaattaataatgaatttaataaagttgCTAAATCAAAAACatcatttgaaattgaaaattatgaattagATATATTAATAGAAGCTGGTTATAAACcagaaaatttagataaattaaaatcattatcaCCAGAACCAGAATCACAACCACCATCATTACAATCAAttgctaataaaataaaagatgaaaagaataatgaaattaatgatgatgatgttgatgttgatgttgatgatgaaaataatattattgaagaaaatattgatgatgatattgTTTTAGATATACAAAATGATGATACACAATTCTCAGCTGAATATATTGATATGGATAGTGATGATATTGATAATCAATTTgatgatattaataatgatgaaattgaaGAAACTAATCGAATAGATATTAGTGAAGAagataatacaaataatacatcagatcattttaaaattgaaaattataatgctGATGATACAATAACacaaaatgataatattataaataaaaatgatgagaatgataataatgatcataatgaatttttaatatttaaagataaaataaaaaaattaacaaaatcaaCAAGAACAATTGGTGCTGAACAAATATGTCAAAAATGTGGTAAAACATTCAGTACTCGTACAAATTTATTACGTCATTTAAAAACTCATGATGGTGTTAAACcatttaaatgtaatatatgtaatgCATTATTTACACAAAAAGGTTCATTAGATCGTCACCATTTATTACATACTGGTGAAAAACCATTTCGTTGTAATTTATGTTCAAGAGCATTTACACAAAGTAAAACATTACAATTTCATATGAGAACACATTCAGGCGAGAAACCATTATCATGTAAAATATGtggttttcaatttttaaaaaaagatggtttaaagcgTCATATGGAAACAAAACATGATGATTTATATACAAATCCAAAAGAATATGAATGTCCAATTTGTTTTAAAACAGTTCAACGTAAAAAGAATTTTGATGAGCATATGCGTAGACATTCGAAAAAAGATGTAACATATACATGTGATGAatgtaataaatcatttcaaacaCAAGAAAGATTAGATATTCATTATCGTTTGCATACGGGTGATTTGccatataaatgtaataaatgtGATAAAGCCTTTCCACGTAAACATACATTGGGTGCCCATTTAAATACACATATGGGTAAACAATTTAAATGTCCAATTTGTAATCGTGGTTTTACACAAAAACATCGGGTGAAAACTCATATGGAAAAACATGATCAAATATTTAAGTGTGGAGTTTGTTCACAAGATTTTCAGAGCAaACACGAAGTTGTTACACACATGAGAATGCATAAAACTTTAGCAAtggaattaatatataaatgtaataattgttCAAATGGTTTTAATACAGACGAAGAACTTCAAACACATATTTCCAATGAACATcctgaataa
- Protein Sequence
- MNIKVEKDICRVCLKSDSGCLNIANTELVQKFQYSTQLKINKNDGLPMFFCNHCTARLKIAYDFRKLSIESDTQMRTFLTKINNEFNKVAKSKTSFEIENYELDILIEAGYKPENLDKLKSLSPEPESQPPSLQSIANKIKDEKNNEINDDDVDVDVDDENNIIEENIDDDIVLDIQNDDTQFSAEYIDMDSDDIDNQFDDINNDEIEETNRIDISEEDNTNNTSDHFKIENYNADDTITQNDNIINKNDENDNNDHNEFLIFKDKIKKLTKSTRTIGAEQICQKCGKTFSTRTNLLRHLKTHDGVKPFKCNICNALFTQKGSLDRHHLLHTGEKPFRCNLCSRAFTQSKTLQFHMRTHSGEKPLSCKICGFQFLKKDGLKRHMETKHDDLYTNPKEYECPICFKTVQRKKNFDEHMRRHSKKDVTYTCDECNKSFQTQERLDIHYRLHTGDLPYKCNKCDKAFPRKHTLGAHLNTHMGKQFKCPICNRGFTQKHRVKTHMEKHDQIFKCGVCSQDFQSKHEVVTHMRMHKTLAMELIYKCNNCSNGFNTDEELQTHISNEHPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00644408;
- 90% Identity
- iTF_00644408;
- 80% Identity
- iTF_00644408;