Este019897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empis stercorea
Gene Symbol
-
Assembly
GCA_949752835.1
Location
OX457087.1:54688423-54690360[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.3e-07 1.4e-05 26.1 2.3 3 23 283 303 281 303 0.97
2 10 0.00029 0.029 15.6 1.8 1 23 309 331 309 331 0.97
3 10 5e-05 0.0051 18.0 3.2 1 23 337 359 337 359 0.99
4 10 0.00048 0.048 14.9 1.1 2 23 366 388 365 388 0.96
5 10 3.4e-05 0.0035 18.5 1.5 1 23 398 420 398 420 0.99
6 10 4.5e-05 0.0045 18.2 1.2 1 23 427 449 427 449 0.98
7 10 8.6e-07 8.6e-05 23.6 2.1 1 23 455 477 455 477 0.99
8 10 2.9e-05 0.0029 18.7 3.5 1 23 482 504 482 504 0.98
9 10 0.00056 0.057 14.7 1.8 1 23 508 530 508 530 0.99
10 10 0.0013 0.13 13.6 0.5 1 23 539 562 539 562 0.96

Sequence Information

Coding Sequence
atgaatattaaagtgGAAAAGGATATTTGTCGAGTATGTTTGAAATCGGATAGTGGATGTTTGAATATTGCAAATACAGAACTagttcaaaaatttcaatactCAACACAATTAAAGattaataaaaatgatggtttaccaatgtttttttgtaatcatTGTACAGCACGTTTAAAAATTGCATATGATTTTCGTAAATTAAGTATTGAATCGGATACACAAATGCGTACATTccttacaaaaattaataatgaatttaataaagttgCTAAATCAAAAACatcatttgaaattgaaaattatgaattagATATATTAATAGAAGCTGGTTATAAACcagaaaatttagataaattaaaatcattatcaCCAGAACCAGAATCACAACCACCATCATTACAATCAAttgctaataaaataaaagatgaaaagaataatgaaattaatgatgatgatgttgatgttgatgttgatgatgaaaataatattattgaagaaaatattgatgatgatattgTTTTAGATATACAAAATGATGATACACAATTCTCAGCTGAATATATTGATATGGATAGTGATGATATTGATAATCAATTTgatgatattaataatgatgaaattgaaGAAACTAATCGAATAGATATTAGTGAAGAagataatacaaataatacatcagatcattttaaaattgaaaattataatgctGATGATACAATAACacaaaatgataatattataaataaaaatgatgagaatgataataatgatcataatgaatttttaatatttaaagataaaataaaaaaattaacaaaatcaaCAAGAACAATTGGTGCTGAACAAATATGTCAAAAATGTGGTAAAACATTCAGTACTCGTACAAATTTATTACGTCATTTAAAAACTCATGATGGTGTTAAACcatttaaatgtaatatatgtaatgCATTATTTACACAAAAAGGTTCATTAGATCGTCACCATTTATTACATACTGGTGAAAAACCATTTCGTTGTAATTTATGTTCAAGAGCATTTACACAAAGTAAAACATTACAATTTCATATGAGAACACATTCAGGCGAGAAACCATTATCATGTAAAATATGtggttttcaatttttaaaaaaagatggtttaaagcgTCATATGGAAACAAAACATGATGATTTATATACAAATCCAAAAGAATATGAATGTCCAATTTGTTTTAAAACAGTTCAACGTAAAAAGAATTTTGATGAGCATATGCGTAGACATTCGAAAAAAGATGTAACATATACATGTGATGAatgtaataaatcatttcaaacaCAAGAAAGATTAGATATTCATTATCGTTTGCATACGGGTGATTTGccatataaatgtaataaatgtGATAAAGCCTTTCCACGTAAACATACATTGGGTGCCCATTTAAATACACATATGGGTAAACAATTTAAATGTCCAATTTGTAATCGTGGTTTTACACAAAAACATCGGGTGAAAACTCATATGGAAAAACATGATCAAATATTTAAGTGTGGAGTTTGTTCACAAGATTTTCAGAGCAaACACGAAGTTGTTACACACATGAGAATGCATAAAACTTTAGCAAtggaattaatatataaatgtaataattgttCAAATGGTTTTAATACAGACGAAGAACTTCAAACACATATTTCCAATGAACATcctgaataa
Protein Sequence
MNIKVEKDICRVCLKSDSGCLNIANTELVQKFQYSTQLKINKNDGLPMFFCNHCTARLKIAYDFRKLSIESDTQMRTFLTKINNEFNKVAKSKTSFEIENYELDILIEAGYKPENLDKLKSLSPEPESQPPSLQSIANKIKDEKNNEINDDDVDVDVDDENNIIEENIDDDIVLDIQNDDTQFSAEYIDMDSDDIDNQFDDINNDEIEETNRIDISEEDNTNNTSDHFKIENYNADDTITQNDNIINKNDENDNNDHNEFLIFKDKIKKLTKSTRTIGAEQICQKCGKTFSTRTNLLRHLKTHDGVKPFKCNICNALFTQKGSLDRHHLLHTGEKPFRCNLCSRAFTQSKTLQFHMRTHSGEKPLSCKICGFQFLKKDGLKRHMETKHDDLYTNPKEYECPICFKTVQRKKNFDEHMRRHSKKDVTYTCDECNKSFQTQERLDIHYRLHTGDLPYKCNKCDKAFPRKHTLGAHLNTHMGKQFKCPICNRGFTQKHRVKTHMEKHDQIFKCGVCSQDFQSKHEVVTHMRMHKTLAMELIYKCNNCSNGFNTDEELQTHISNEHPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00644683;
90% Identity
iTF_00644683;
80% Identity
iTF_00644683;