Eliv003611.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010645.1:49869480-49870934[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00015 0.75 10.1 0.1 27 50 57 79 49 82 0.76 2 7 0.1 5.1e+02 1.0 0.1 27 45 110 128 104 133 0.89 3 7 0.0012 6.2 7.2 0.0 21 51 265 295 259 297 0.90 4 7 1.1 5.5e+03 -2.3 0.0 27 43 309 326 307 333 0.59 5 7 0.18 9.1e+02 0.2 0.1 25 46 332 353 325 356 0.82 6 7 0.42 2.1e+03 -0.9 0.0 21 43 392 414 388 420 0.85 7 7 0.00016 0.79 10.0 0.0 13 45 434 466 427 472 0.91
Sequence Information
- Coding Sequence
- atgcTAGATCTACATTATCGTGATGATGAAGCTCTACACGAACTAACGAAATCGTCACCAGCACGAGGTAAATttcaatgtaatttatgtaaatccAGATGTTTTACTGAAACTCAATTAAATAGTCACTTGAAAATTCATGAAAGCAGTGATGCTGGTAAATTTTACTGTAGGACATGTGATATATTATTTGCCACAAGCCGCAATTTACGACGGCATATACAATCACATCAAGTAAAACCAAAGCGATTTGTGCAGAATGATGAAGTCTTAACTGAAATACAGTATGAAACAAGTTGTATGCCGAacgaaaccaaaatattggaATGTAAAATATGCAATGCaacatttccaaaaatattaattttaagacaACATTTACAGAGTCATAAAAAACCAGAAAGtattgatattgaaaatttaaaagaaaatgattatttaacaaatcttATACCAAATGGTGCCACAAATTTGTGCAAACTAATTGAATATATCGTTGCTGAACTTGAAGCAGGCCgtactgaaaaattttattcagcaACAAATATGGTTGGTAATGAGCTGAGCTTGAGTGATTCTGAAACTGATACGGATGCCGAAGATGAACTATTACAACAAACTACATACGGTTGCGAATTATGTAACAAAAGATTTACACGtcgttataaaattttatatcaccAGAAAAATGAACACCAAACAGATATAATGGAAAATCAATgtgttttatgtaaaattaaatatgcttCAAAAACTTTGTTGGAATATCATGTAAAAACACAATGTGGTAATACTGAAAAACAGTATACTtgttatatttgtaaaatgaaatatatgtGGAAAGATAATATGATAAGACACATAAAATTACATCATAAATCAAAAGaactaattcaaaaatatttaccccCAAAAAAAGAGgaatgtaaaatttgtaacaaaaaggTAACACGATTAGATAGACATTTAGTTGTACatgaattagaaaaaaattttcaatgtgaGAAATGTTTGATGAAGTTCAAGCGAAAATCTAATTTACGAGTTCATATGAAAATTCACGACGAAAATTACAATGACCCATCGGAAGTCAATAAATCACATTTGTGTGGGTTTTGTGGtagaaaatttcgaaaaaaatcacatttagTTTACCATAATCGTGTTCACACTGGTGAAAAACCTTATAAATGTGAATTTTGTGATAGAGGTTTTACAAGTTCTTCTAATCTGACAGTACATCGCAGATCACATACCGGTGAAAAACACATAGTTTGCAAGAAAAAATTCACTCATTCGTATAAACCTAAAAGTACAGCAAAATTGGAAAAACATTTTCAGTGTGACATATGTTTAAGGCTATTTAAGCGAAAAGATAATTTGAAATCACATATGAAAACTCACAAAGATATTAAAACAGAACCCCcagaagataatttaaattttttatggtag
- Protein Sequence
- MLDLHYRDDEALHELTKSSPARGKFQCNLCKSRCFTETQLNSHLKIHESSDAGKFYCRTCDILFATSRNLRRHIQSHQVKPKRFVQNDEVLTEIQYETSCMPNETKILECKICNATFPKILILRQHLQSHKKPESIDIENLKENDYLTNLIPNGATNLCKLIEYIVAELEAGRTEKFYSATNMVGNELSLSDSETDTDAEDELLQQTTYGCELCNKRFTRRYKILYHQKNEHQTDIMENQCVLCKIKYASKTLLEYHVKTQCGNTEKQYTCYICKMKYMWKDNMIRHIKLHHKSKELIQKYLPPKKEECKICNKKVTRLDRHLVVHELEKNFQCEKCLMKFKRKSNLRVHMKIHDENYNDPSEVNKSHLCGFCGRKFRKKSHLVYHNRVHTGEKPYKCEFCDRGFTSSSNLTVHRRSHTGEKHIVCKKKFTHSYKPKSTAKLEKHFQCDICLRLFKRKDNLKSHMKTHKDIKTEPPEDNLNFLW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00643496;
- 90% Identity
- iTF_00643496;
- 80% Identity
- iTF_00643496;