Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010645.1:49869480-49870934[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.022 1.3 9.8 4.3 1 23 25 47 25 47 0.96

2 12 2.7e-05 0.0016 18.9 1.3 1 23 55 77 55 77 0.98

3 12 0.13 8 7.3 0.2 2 23 109 130 108 130 0.92

4 12 0.002 0.12 13.1 1.6 3 23 211 232 209 232 0.95

5 12 0.071 4.3 8.1 0.2 2 22 240 260 239 260 0.95

6 12 0.043 2.6 8.9 2.6 1 23 269 291 269 292 0.96

7 12 0.8 48 4.8 0.1 2 13 308 319 308 326 0.86

8 12 6.4e-07 3.8e-05 24.0 2.6 1 23 332 354 332 354 0.99

9 12 0.0012 0.07 13.8 5.5 3 23 370 390 368 390 0.95

10 12 1.2e-07 7e-06 26.4 1.8 1 23 396 418 396 418 0.99

11 12 6.8 4.1e+02 1.9 0.2 5 14 425 434 423 435 0.86

12 12 8.4e-07 5.1e-05 23.7 2.4 1 23 446 468 446 468 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.022	1.3	9.8	4.3	1	23	25	47	25	47	0.96
2	12	2.7e-05	0.0016	18.9	1.3	1	23	55	77	55	77	0.98
3	12	0.13	8	7.3	0.2	2	23	109	130	108	130	0.92
4	12	0.002	0.12	13.1	1.6	3	23	211	232	209	232	0.95
5	12	0.071	4.3	8.1	0.2	2	22	240	260	239	260	0.95
6	12	0.043	2.6	8.9	2.6	1	23	269	291	269	292	0.96
7	12	0.8	48	4.8	0.1	2	13	308	319	308	326	0.86
8	12	6.4e-07	3.8e-05	24.0	2.6	1	23	332	354	332	354	0.99
9	12	0.0012	0.07	13.8	5.5	3	23	370	390	368	390	0.95
10	12	1.2e-07	7e-06	26.4	1.8	1	23	396	418	396	418	0.99
11	12	6.8	4.1e+02	1.9	0.2	5	14	425	434	423	435	0.86
12	12	8.4e-07	5.1e-05	23.7	2.4	1	23	446	468	446	468	0.99

Sequence Information

Coding Sequence: atgcTAGATCTACATTATCGTGATGATGAAGCTCTACACGAACTAACGAAATCGTCACCAGCACGAGGTAAATttcaatgtaatttatgtaaatccAGATGTTTTACTGAAACTCAATTAAATAGTCACTTGAAAATTCATGAAAGCAGTGATGCTGGTAAATTTTACTGTAGGACATGTGATATATTATTTGCCACAAGCCGCAATTTACGACGGCATATACAATCACATCAAGTAAAACCAAAGCGATTTGTGCAGAATGATGAAGTCTTAACTGAAATACAGTATGAAACAAGTTGTATGCCGAacgaaaccaaaatattggaATGTAAAATATGCAATGCaacatttccaaaaatattaattttaagacaACATTTACAGAGTCATAAAAAACCAGAAAGtattgatattgaaaatttaaaagaaaatgattatttaacaaatcttATACCAAATGGTGCCACAAATTTGTGCAAACTAATTGAATATATCGTTGCTGAACTTGAAGCAGGCCgtactgaaaaattttattcagcaACAAATATGGTTGGTAATGAGCTGAGCTTGAGTGATTCTGAAACTGATACGGATGCCGAAGATGAACTATTACAACAAACTACATACGGTTGCGAATTATGTAACAAAAGATTTACACGtcgttataaaattttatatcaccAGAAAAATGAACACCAAACAGATATAATGGAAAATCAATgtgttttatgtaaaattaaatatgcttCAAAAACTTTGTTGGAATATCATGTAAAAACACAATGTGGTAATACTGAAAAACAGTATACTtgttatatttgtaaaatgaaatatatgtGGAAAGATAATATGATAAGACACATAAAATTACATCATAAATCAAAAGaactaattcaaaaatatttaccccCAAAAAAAGAGgaatgtaaaatttgtaacaaaaaggTAACACGATTAGATAGACATTTAGTTGTACatgaattagaaaaaaattttcaatgtgaGAAATGTTTGATGAAGTTCAAGCGAAAATCTAATTTACGAGTTCATATGAAAATTCACGACGAAAATTACAATGACCCATCGGAAGTCAATAAATCACATTTGTGTGGGTTTTGTGGtagaaaatttcgaaaaaaatcacatttagTTTACCATAATCGTGTTCACACTGGTGAAAAACCTTATAAATGTGAATTTTGTGATAGAGGTTTTACAAGTTCTTCTAATCTGACAGTACATCGCAGATCACATACCGGTGAAAAACACATAGTTTGCAAGAAAAAATTCACTCATTCGTATAAACCTAAAAGTACAGCAAAATTGGAAAAACATTTTCAGTGTGACATATGTTTAAGGCTATTTAAGCGAAAAGATAATTTGAAATCACATATGAAAACTCACAAAGATATTAAAACAGAACCCCcagaagataatttaaattttttatggtag
Protein Sequence: MLDLHYRDDEALHELTKSSPARGKFQCNLCKSRCFTETQLNSHLKIHESSDAGKFYCRTCDILFATSRNLRRHIQSHQVKPKRFVQNDEVLTEIQYETSCMPNETKILECKICNATFPKILILRQHLQSHKKPESIDIENLKENDYLTNLIPNGATNLCKLIEYIVAELEAGRTEKFYSATNMVGNELSLSDSETDTDAEDELLQQTTYGCELCNKRFTRRYKILYHQKNEHQTDIMENQCVLCKIKYASKTLLEYHVKTQCGNTEKQYTCYICKMKYMWKDNMIRHIKLHHKSKELIQKYLPPKKEECKICNKKVTRLDRHLVVHELEKNFQCEKCLMKFKRKSNLRVHMKIHDENYNDPSEVNKSHLCGFCGRKFRKKSHLVYHNRVHTGEKPYKCEFCDRGFTSSSNLTVHRRSHTGEKHIVCKKKFTHSYKPKSTAKLEKHFQCDICLRLFKRKDNLKSHMKTHKDIKTEPPEDNLNFLW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00643740;
90% Identity: iTF_00643740;
80% Identity: iTF_00643740;