Eliv014223.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010648.1:35724161-35726015[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.05 2.5e+02 2.1 0.0 27 52 250 275 246 276 0.79 2 6 0.00083 4.2 7.7 0.0 23 48 274 299 268 304 0.84 3 6 0.0069 34 4.8 0.1 21 45 300 324 298 331 0.86 4 6 0.0003 1.5 9.2 0.0 21 48 328 355 322 357 0.88 5 6 0.0083 42 4.5 0.0 26 44 366 384 360 392 0.85 6 6 0.012 61 4.0 0.1 26 47 450 470 444 479 0.87
Sequence Information
- Coding Sequence
- atgaatattaaggTCGAAAAGGATATTTGTCGGGTATGTTTAAAATCCGATAATGGATGTTTGAATGTTGCAAATCAAGACCTAGTtaacaaatttcaatattcaaCACAATTAAAGgTTACTAACAATGATGGACTAccaatgtttttttgtaatcattGTACAGCACGTCTTAAAATTGCTTATGATTTTCGTAAATTAAGCATTGAATCGGATACACAAATGCGTACATTccttactaaaattaataatgaatttaataaagtagCTAAATCAAAAACAtcatttgaaattgaaaattatgaattagaTATTCTGATCGAAGCTGGATATAAACCAGAAAAtcataatgatttaaaaacatCATCAATAACAtcactgaaaaaaattaaaagtgaaaaaaaaactgatcatgattataataatgataataataaagataataatCATATTCATGTTGATGATATAGATTTAGATTTACAACAAGATGATACACAATTTTCAGCTGAATACATTGATATGGACAGTGAAGATATTGAAAATCAATTCGATATAGATAATGATATTGAAGAAACTAATCAATTAGCTTCAATTAGTGAAGATAATACAAATGATACTACagatgattttaaaatagaaagttATAAAGCTGATGATGAAAATGATGATAAAGAAGATCTTCatagtgaatttttaatatttaaagataaaaataaaaaaacaaaaacaattggTGCTGAacaaatttgtcaaaaatgtGGTAAAACATTCAGTACACGTACAAATTTATCACGTCATTTGAAAACTCATGACGGTGCTAAACCATATACATGCACAATTTGTAATTCATCATTTACACAAAAAGGTTCATTAGATCGTCATCATTTATTACATACTGGCGAAAAACCATTTCGTTGTAATTTATGTTCAAGGGCGTTTACACAGAGTAAAACTTTACAATTTCATATGAGAACACATTCAGGAGAGAAACCGTTTTCTTGTAAAATATGtggatttcaatttttgaaaaaggatggattaaagcgaCATATGGAAGTAAAACATGATGACTTATATACACATCCAAAAGATTATGAATGTCCAATTTGTAGTAAAACAGttcaacggaaaaaaaatttcgatgaACATATGCGAAAACACTCAAAAAAAGATGTAACTTATACATGTCATGAATGCAATAAATCATTTCAAACGCAAGATAGGTTGGATATCCATAATCGTTTGCATACTGGCGATTTACCTTATAAATGCAACAAATGTAATAAAGCTTTTCCACGTAAACATACATTAGGTGCTCATTTAAATACACATATGggtaaacaatttaaatgtcCAATTTGTAATCGTGGTTTTACACAAAAACACCGAATGAAAGCACATATGGAAAGGCATGATCAAATATTCAAATGTGGAATTTGTTCCCAAGATTTCCAGAGCAAACAAGAAGTTATTATTCATATGAGAACGCACAAAAGTCTTTCAAtggaattaatatataaatgtgaAAGCTGTTCCAGTACTTTTAAAACTGACGAAGAACGTCAAACACATATTAACACTGAACATCCTGAATAA
- Protein Sequence
- MNIKVEKDICRVCLKSDNGCLNVANQDLVNKFQYSTQLKVTNNDGLPMFFCNHCTARLKIAYDFRKLSIESDTQMRTFLTKINNEFNKVAKSKTSFEIENYELDILIEAGYKPENHNDLKTSSITSLKKIKSEKKTDHDYNNDNNKDNNHIHVDDIDLDLQQDDTQFSAEYIDMDSEDIENQFDIDNDIEETNQLASISEDNTNDTTDDFKIESYKADDENDDKEDLHSEFLIFKDKNKKTKTIGAEQICQKCGKTFSTRTNLSRHLKTHDGAKPYTCTICNSSFTQKGSLDRHHLLHTGEKPFRCNLCSRAFTQSKTLQFHMRTHSGEKPFSCKICGFQFLKKDGLKRHMEVKHDDLYTHPKDYECPICSKTVQRKKNFDEHMRKHSKKDVTYTCHECNKSFQTQDRLDIHNRLHTGDLPYKCNKCNKAFPRKHTLGAHLNTHMGKQFKCPICNRGFTQKHRMKAHMERHDQIFKCGICSQDFQSKQEVIIHMRTHKSLSMELIYKCESCSSTFKTDEERQTHINTEHPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00643462;
- 90% Identity
- iTF_00643462;
- 80% Identity
- iTF_00643462;