Eliv014223.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empis livida
Gene Symbol
-
Assembly
GCA_963932195.1
Location
OZ010648.1:35724161-35726015[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.6e-07 9.5e-06 25.9 2.6 3 23 250 270 248 270 0.97
2 10 8.2e-05 0.005 17.4 2.5 1 23 276 298 276 298 0.97
3 10 4.9e-05 0.003 18.1 3.2 1 23 304 326 304 326 0.99
4 10 0.00029 0.018 15.6 1.1 1 23 332 355 332 355 0.96
5 10 1.3e-05 0.00081 19.9 1.3 1 23 365 387 365 387 0.99
6 10 0.00021 0.012 16.1 3.0 1 23 394 416 394 416 0.97
7 10 1.7e-06 0.0001 22.7 2.6 1 23 422 444 422 444 0.99
8 10 6.9e-06 0.00042 20.8 2.8 1 23 449 471 449 471 0.98
9 10 0.00011 0.0067 17.0 0.4 1 23 475 497 475 497 0.99
10 10 0.0092 0.55 11.0 1.2 1 23 506 529 506 529 0.98

Sequence Information

Coding Sequence
atgaatattaaggTCGAAAAGGATATTTGTCGGGTATGTTTAAAATCCGATAATGGATGTTTGAATGTTGCAAATCAAGACCTAGTtaacaaatttcaatattcaaCACAATTAAAGgTTACTAACAATGATGGACTAccaatgtttttttgtaatcattGTACAGCACGTCTTAAAATTGCTTATGATTTTCGTAAATTAAGCATTGAATCGGATACACAAATGCGTACATTccttactaaaattaataatgaatttaataaagtagCTAAATCAAAAACAtcatttgaaattgaaaattatgaattagaTATTCTGATCGAAGCTGGATATAAACCAGAAAAtcataatgatttaaaaacatCATCAATAACAtcactgaaaaaaattaaaagtgaaaaaaaaactgatcatgattataataatgataataataaagataataatCATATTCATGTTGATGATATAGATTTAGATTTACAACAAGATGATACACAATTTTCAGCTGAATACATTGATATGGACAGTGAAGATATTGAAAATCAATTCGATATAGATAATGATATTGAAGAAACTAATCAATTAGCTTCAATTAGTGAAGATAATACAAATGATACTACagatgattttaaaatagaaagttATAAAGCTGATGATGAAAATGATGATAAAGAAGATCTTCatagtgaatttttaatatttaaagataaaaataaaaaaacaaaaacaattggTGCTGAacaaatttgtcaaaaatgtGGTAAAACATTCAGTACACGTACAAATTTATCACGTCATTTGAAAACTCATGACGGTGCTAAACCATATACATGCACAATTTGTAATTCATCATTTACACAAAAAGGTTCATTAGATCGTCATCATTTATTACATACTGGCGAAAAACCATTTCGTTGTAATTTATGTTCAAGGGCGTTTACACAGAGTAAAACTTTACAATTTCATATGAGAACACATTCAGGAGAGAAACCGTTTTCTTGTAAAATATGtggatttcaatttttgaaaaaggatggattaaagcgaCATATGGAAGTAAAACATGATGACTTATATACACATCCAAAAGATTATGAATGTCCAATTTGTAGTAAAACAGttcaacggaaaaaaaatttcgatgaACATATGCGAAAACACTCAAAAAAAGATGTAACTTATACATGTCATGAATGCAATAAATCATTTCAAACGCAAGATAGGTTGGATATCCATAATCGTTTGCATACTGGCGATTTACCTTATAAATGCAACAAATGTAATAAAGCTTTTCCACGTAAACATACATTAGGTGCTCATTTAAATACACATATGggtaaacaatttaaatgtcCAATTTGTAATCGTGGTTTTACACAAAAACACCGAATGAAAGCACATATGGAAAGGCATGATCAAATATTCAAATGTGGAATTTGTTCCCAAGATTTCCAGAGCAAACAAGAAGTTATTATTCATATGAGAACGCACAAAAGTCTTTCAAtggaattaatatataaatgtgaAAGCTGTTCCAGTACTTTTAAAACTGACGAAGAACGTCAAACACATATTAACACTGAACATCCTGAATAA
Protein Sequence
MNIKVEKDICRVCLKSDNGCLNVANQDLVNKFQYSTQLKVTNNDGLPMFFCNHCTARLKIAYDFRKLSIESDTQMRTFLTKINNEFNKVAKSKTSFEIENYELDILIEAGYKPENHNDLKTSSITSLKKIKSEKKTDHDYNNDNNKDNNHIHVDDIDLDLQQDDTQFSAEYIDMDSEDIENQFDIDNDIEETNQLASISEDNTNDTTDDFKIESYKADDENDDKEDLHSEFLIFKDKNKKTKTIGAEQICQKCGKTFSTRTNLSRHLKTHDGAKPYTCTICNSSFTQKGSLDRHHLLHTGEKPFRCNLCSRAFTQSKTLQFHMRTHSGEKPFSCKICGFQFLKKDGLKRHMEVKHDDLYTHPKDYECPICSKTVQRKKNFDEHMRKHSKKDVTYTCHECNKSFQTQDRLDIHNRLHTGDLPYKCNKCNKAFPRKHTLGAHLNTHMGKQFKCPICNRGFTQKHRMKAHMERHDQIFKCGICSQDFQSKQEVIIHMRTHKSLSMELIYKCESCSSTFKTDEERQTHINTEHPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00643739;
90% Identity
iTF_00643739;
80% Identity
iTF_00643739;