Eliv010649.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- Aef1
- Assembly
- GCA_963932195.1
- Location
- OZ010647.1:37357985-37358731[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.011 57 4.1 0.1 22 48 99 125 89 129 0.84 2 4 5.5e-06 0.028 14.7 0.1 21 52 126 157 122 158 0.89 3 4 0.0054 27 5.1 0.0 21 51 154 184 152 185 0.87 4 4 0.00014 0.69 10.2 0.1 21 47 182 208 179 213 0.89
Sequence Information
- Coding Sequence
- ATGActaattgtgaaatattaattgttacCACAAGTGATGGTAATAGATCACATATTCAAATTCCGGTATCACGTACAATACCAACATCAGCCACACCACGTTCAATAATATCAActgtaattaataatagtaatttagtAAATGCTGCTGCCGTTGCTGCAACATCAACACCATCatctataattaataataataattcctctttaaatgaaaatactaCTAATAATACTGTACAAATGCCAACtgaaatgattataaatagTAGAACAGCAAGAACAGCTAATGGTTCATTAGATAAACCATTTCAGTGTAATGTTTGTGAAAGAAAATTCCGACAATTGAGTACATTAACAAATCATGTAAAAATTCATACTGGTGAAAAACCTTTTAAATGTTCAATAtgtgaaaaatgttttagGCAGTCAAGTACATTaacaaatcatttaaaaattcatactgGTGAAAAACCATTTGGGTGTACGTATTGTGGAAAACAatTTCGACAATTGAGCACATTAactaatcatttaaaaattcatactgGTGAAAAACCATTTGAATGCGCTGTTTGTAAGAAACAGTTTCGTCAATCAAGCActttaaataatcatataaaaattcatgttATGGATAAACTATATATACCATTTGAGAttaaagaagaagaagaaggctga
- Protein Sequence
- MTNCEILIVTTSDGNRSHIQIPVSRTIPTSATPRSIISTVINNSNLVNAAAVAATSTPSSIINNNNSSLNENTTNNTVQMPTEMIINSRTARTANGSLDKPFQCNVCERKFRQLSTLTNHVKIHTGEKPFKCSICEKCFRQSSTLTNHLKIHTGEKPFGCTYCGKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKLYIPFEIKEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00643558; iTF_00644508; iTF_00644684;
- 90% Identity
- iTF_00643558; iTF_00644508; iTF_00644684;
- 80% Identity
- iTF_00643558;