Ecor009608.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352714.1:3795640-3799727[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0053 35 4.7 0.0 21 48 281 308 276 310 0.88 2 12 3.9e-05 0.26 11.6 0.1 21 45 310 334 304 337 0.88 3 12 0.031 2e+02 2.3 0.1 21 50 383 412 380 417 0.89 4 12 0.00037 2.4 8.5 0.0 20 45 438 463 432 466 0.90 5 12 0.0028 18 5.7 0.1 21 48 512 539 508 542 0.90 6 12 0.0071 47 4.3 0.0 27 46 549 568 547 570 0.91 7 12 0.0045 30 5.0 0.1 21 48 614 641 611 646 0.90 8 12 0.0016 11 6.4 0.0 23 46 657 680 652 686 0.86 9 12 0.2 1.3e+03 -0.3 0.1 25 46 744 765 738 771 0.80 10 12 0.0036 24 5.3 0.0 22 46 769 793 765 799 0.89 11 12 0.08 5.3e+02 1.0 0.0 21 46 824 849 818 852 0.86 12 12 0.0013 8.7 6.7 0.2 20 44 852 876 850 884 0.89
Sequence Information
- Coding Sequence
- ATGTCTACCACAACACCTGATTCAGTTCTGTGTCGAGTATGTTTCGCAGATAATATGAAAATGCATGATATCACCAACACTCGGTATCAGGAGATGTTTGAGAAAATGACGGGCGAGACGATGTTGATAGGTGATGGTCGTCCTGACACACTGTGTTTCATATGCCACTCACAGCTCCAAAAGCTCTGGAGGTTTATTGAGATGTCTCTGAACTCTGAGAAAAATCTGACAAAGTTTCTGAATTACGGTGTACAACTAACTCAACTATCAGTAGATCTGCTTGATAGAGTATATCATCAGAACTTGTCAGTTACCTCGGTCAAGCAAACATTTGACTTTACAATTTATGACGGTGTGAAAGAAGAAACTGAAACTCCTGTCAAAATAGAATCATTTGGTGGCAAGCTAGAACAACTTTGTAATGAAATTGAAGATCCTGCTACGGATAATTATAATGACGACTCCGAACCAGACCCATTAGAAGAAGTTGAAGTTGTAACTATTAAAGTTGAATCCAATGAAGCGAAGCTATCAATCACTGCCTATCCATGTGAAGTATGTCCCCGGCGGTTTAACTCTATCAAAGATTTGAATCGGCACAAAGTAACCGTTCATAAACTACAACATAATTGCAGATCGTGTGGCGATACATTTGTAGATCCTAATCTTTTGAAAATACATATGAGATTTCACAAACAAGAAAGTTTTAAGGCATATAGCAATGATAGTGATCGAGAGTCTCTAATGGTTTCCGTGGGGCAGAAATTTGGCTGTGTGCTGTGCAAGAAAACGTTTACCCAGAAAGGACATCTGAAAACACATATTATGGCTTTTCACACCGGCGAAAAACCATTTGCTTGTTCAATATGCGATAAAAGGTTCGTACAAAAAAGCAATCTGGGAACGCATATGAGACATGCGCACACTAAGGAAAAACCTTTCACTTGTACTATTTGCCAGGGAGTGTGCAGGGACGACACCCATTTGAAGGAACACATGGCTATTCACAATGGAGAAACTTCACTAGTAAATGCTATGGATATCATTGAGAATGCTGATGGGGGCAAGCCCTTTACTTGCGGAAGGTGCGGTAAGTCATTTACAGCAAAAGCTCATTTAAAATCTCATGTAATGGCGATACATACTGGAGAGCGACCATTTGCGTGCACTATGTGTGATAAAAAGTACACACAAAAAAGCCATTTAAAATTACACGCAAGGCTGTCACACGTTGTTGAAAAACCGTTCGCATGCGATGATTGCGAAATGAGATTCGATGACGCTGAGTCTTTGAGAAAACACGAAAAATTTCACGCTGAATCCCCTTTTACCTGTACTACGTGCCATAAGGTATTCCTTACGGAAACCAATCTCAAGAAACATATGAAAACTCACAGTGAAACTACAGCGAGCGATGATATCGATGAGAACATGAAAACCTGTACGAAAGTGAAGCCATTCGCTTGCGTATTATGCAGCAAAAGGTTCGGCTGGAAATCTCATTTGAAATCACACATAATGGCAATTCACACTGGTGAAAGACCATATTCATGCTCAATGTGCGACAAAAAGTTCGTACAGCAAAGCAATTTAAGGTTACACGCAAAGGTAGCACACTCTATAGACAGATTGAACCTATACGATTGTGGCATTTGCAACAAAGTGTTCCGGAAGGAGAATACTCTGAAGAAACATATGAGTATTCACGACGAAGAAACTTTAATAGAAAACGATAATGAATATGGTCAAAAGAAAGCTAAGCCGTTTGAATGCATGTTGTGCAATAGGAGCTTTGGCTGGAAATCACATTTAAAAACACATATAATGGCACTACACACCGACGAGAGACCTTTCAAGTGCCCTTTGTGTGATAAAAAGTTTGTCCAAAAATGCTACCTAAGATACCACGTGAAAACAGCTCACCCAGGAGATAGAGCAAAACAGCACATGCTGAACATCGGAGCAGGCAGGCCATTTACATGCAAAATATGCTACATCACATTCGTAAATAAAATAAACTTCGAAAAGCACAAAAAACTGCATACAGATACACCTCCATATTTATGCAACAAGTGTGGTCTAAAGTTTGATACGAAGATCGATTTCGATTCACATAACTTGAGCTTGCATTCCAGAGAGTTGCCGTTTATTTGTAAGACATGTCACTCGCGATTCGAGGACAACGCCGCCCTGAAGACGCATCAGCTTACGCATATGGAGAGAAAATCGCTTACTTGTGATACTTGCAACAGAACATTTCTCGCACACAGCGCTTTAAGACGACACATGTTTATCCACAGTGATGACAAACCTTTCGCTTGCAAACTTTGCAATAAAACCTTTAAGCAAGAACGAATTTTAACGAAACACATGCAAATTCATACTGGGGAGAAAAAGTATGGGTGCGACAACTGTGACAGAAAATTCTACCAAAGAGGTAACTTGATAAGCCATATGAGAATCCACTCTGGAGAAAAGCCATTTGTTTGTGACCGCTGCGGAAACAGTTTCAACCAGAAAAGTCACTTAAGAACTCATGTGTTGTTCATACATAGTTCGGAAAAGCCATTTACATGTACAGTGTGTAACAAAAAGTTTAGGCTTAAGAGTTGTTTGAGGAATCATCAGATGGTTCATACTGGAGAAAGGCCATACCCGTGTGATAAATGTGACAAGAAGTATTATAAAAAGGGCGAATTAAAGTCGCATGTATTAAAAATGCATTCCTAA
- Protein Sequence
- MSTTTPDSVLCRVCFADNMKMHDITNTRYQEMFEKMTGETMLIGDGRPDTLCFICHSQLQKLWRFIEMSLNSEKNLTKFLNYGVQLTQLSVDLLDRVYHQNLSVTSVKQTFDFTIYDGVKEETETPVKIESFGGKLEQLCNEIEDPATDNYNDDSEPDPLEEVEVVTIKVESNEAKLSITAYPCEVCPRRFNSIKDLNRHKVTVHKLQHNCRSCGDTFVDPNLLKIHMRFHKQESFKAYSNDSDRESLMVSVGQKFGCVLCKKTFTQKGHLKTHIMAFHTGEKPFACSICDKRFVQKSNLGTHMRHAHTKEKPFTCTICQGVCRDDTHLKEHMAIHNGETSLVNAMDIIENADGGKPFTCGRCGKSFTAKAHLKSHVMAIHTGERPFACTMCDKKYTQKSHLKLHARLSHVVEKPFACDDCEMRFDDAESLRKHEKFHAESPFTCTTCHKVFLTETNLKKHMKTHSETTASDDIDENMKTCTKVKPFACVLCSKRFGWKSHLKSHIMAIHTGERPYSCSMCDKKFVQQSNLRLHAKVAHSIDRLNLYDCGICNKVFRKENTLKKHMSIHDEETLIENDNEYGQKKAKPFECMLCNRSFGWKSHLKTHIMALHTDERPFKCPLCDKKFVQKCYLRYHVKTAHPGDRAKQHMLNIGAGRPFTCKICYITFVNKINFEKHKKLHTDTPPYLCNKCGLKFDTKIDFDSHNLSLHSRELPFICKTCHSRFEDNAALKTHQLTHMERKSLTCDTCNRTFLAHSALRRHMFIHSDDKPFACKLCNKTFKQERILTKHMQIHTGEKKYGCDNCDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFIHSSEKPFTCTVCNKKFRLKSCLRNHQMVHTGERPYPCDKCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638825;
- 90% Identity
- iTF_00638825;
- 80% Identity
- iTF_00638825;