Basic Information

Gene Symbol
Lrrfip2
Assembly
GCA_947095575.1
Location
OX352702.1:13294336-13299722[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.3e-70 1.4e-65 221.6 17.4 1 268 14 271 14 293 0.89
2 2 0.22 4.3e+03 -3.2 8.8 125 170 315 360 306 369 0.55

Sequence Information

Coding Sequence
ATGTCGTTCCGTCATTTGTCGAATTCTAGTGAGAATACGGCAGAACAGCGTCTGGCTGCGCGGCGGGCAGCGCGAGCTGAGGCCAGAGATATCCGCATGAGAGAGCTGGAGAGACAGCAACGGGAACAAGAGGACCATGCTGACAAGGCGTATGATATGTACGCAGAAACAGTCGGCAGACGAGGCCCTCGGCTGGCAGCCCTCAGTCCGGCCGCGGTGCTCTCGCCACGCAGGAGTTCAGAGGATTCTGCGGATGATACCTTTAACGTCAAAGACTTGAGGCATGATCTGAAAGAAGTTGAAGAGAAGTTCCGCAAAGCAATGATTCTGAACGCGCAGTTAGACAACGACAAAGCATCGCTCGGCTATCAGCTGGAACTGCTCAAGGACAGGATCGATGAGCTACAAGAGGAATACGCACAATTACAGCGCGAGCATCGGGAGAAGTGTTCCGTCCACGAGCGGCTAAAGCGCGAGCACGTGTGCGTGGAGCGCGAGCTGTCGGCGGCGCGGGACGCGGTGCTGGCGCGCGAGGCGGCGGCGGCGGCGGCGGGCTACGTGTTCGCGGAGGCGCCGCCCGGAGCCGCCGCCGCCGGCTTCGGCGCCGTGCCGCCGCTGGCGCTGCTCTCGCACCAAGCCGACCTCTTGCTCGGAGAGCCGGAGGCCACCCTGGACGTGCGGTTGCAGAACCTGGTCACCTCAAAGCAGTCTCTGGAATCAGAGGTGCGCAAACTGAAACTCACATTAAACGAAGAACGCGCCGCGAGACAGAACGGCGTCGCCAACCACCACGACGACCAGTACGAGACTGAATTGGAATCGCTTCGGAAGTGTTGCGTGGAGGCGAAGGGGCGGGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGCGGCCAGCAGCGCGCGCCTCGAGGCACAGCTGCAGCGCCTGCGTGCGCGGCAGGACTCGCACGACGACCTCGAGGAGCATCTCAAGCACGAGCGCAGGAAGCTGCAGCGAGAGGCGCGAGAGGCTCAGAATCGCGTGGAAGAGTTGGAGACAGAAAACAGCCACCTCACCAAGAGACTCGACAAACTGAAGAACGCCAAATCTGCACTGCTCAAGGACCTGTGA
Protein Sequence
MSFRHLSNSSENTAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFNVKDLRHDLKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHREKCSVHERLKREHVCVERELSAARDAVLAREAAAAAAGYVFAEAPPGAAAAGFGAVPPLALLSHQADLLLGEPEATLDVRLQNLVTSKQSLESEVRKLKLTLNEERAARQNGVANHHDDQYETELESLRKCCVEAKGRAARAEAEAALQAASSARLEAQLQRLRARQDSHDDLEEHLKHERRKLQREAREAQNRVEELETENSHLTKRLDKLKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00432218;
90% Identity
-
80% Identity
-