Egri024602.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759242.1:22695720-22707182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 2.8e+02 3.7 0.4 2 23 6 27 5 27 0.96 2 13 0.012 1.5 10.8 0.4 1 23 1049 1072 1049 1072 0.92 3 13 0.00051 0.066 15.1 2.1 2 23 1191 1212 1190 1212 0.96 4 13 0.00015 0.019 16.8 3.1 1 23 1218 1240 1218 1240 0.98 5 13 0.0048 0.62 12.1 2.6 2 23 1247 1268 1246 1269 0.94 6 13 1 1.3e+02 4.7 0.4 6 23 1283 1300 1280 1300 0.98 7 13 0.0043 0.55 12.2 3.7 3 23 1307 1328 1306 1328 0.97 8 13 0.22 29 6.8 0.4 3 23 1346 1365 1345 1365 0.97 9 13 7.3e-05 0.0094 17.8 0.8 1 20 1371 1390 1371 1393 0.91 10 13 0.0054 0.7 11.9 1.0 1 23 1401 1423 1401 1423 0.98 11 13 0.0066 0.85 11.6 7.2 1 23 1429 1451 1429 1451 0.98 12 13 1.1e-05 0.0014 20.4 1.4 1 23 1457 1481 1457 1481 0.97 13 13 0.0012 0.16 13.9 5.1 1 23 1487 1509 1487 1510 0.95
Sequence Information
- Coding Sequence
- ATGGATCCGCTCTTGCAGTGTCCTGTGTGCACCCTTTTTCTCCATAATGGAATGACCCTGGAGTCACATTTGGACACACATCCTAAAGACCAAGTTATAAAAGCATTGTGTAATCTGACTACCAAGGCTCCCAGTTATGGAAGCAGGACTACCACTCCATTACATTCAGAACGGTCATACAGAAGTAGGTCACGGACACCTGCACCTGATGATAGCAGATGGAATGGATCCCATAGAAGTGACGACCGCTACTGGAGGAGAACACCCAGTAGAACGCCTAAGAGTTCTATATCAAGTTCAACAAGAATTGGAGCATCTGATATGCGAATGAGTGATATGAATTTTGAAAACAATTGTAGTTCTGTTAATACAGGCCAACTTTCAGGTGCTCCATTTATAATGAAAGCTGATAAAATCCAGCAGACATACCAAACTCCTCCCATATCAGAATTTGACCCACAGTATATTTACTATGACCAACAAGAggataaagaaattaaatattccCGTAGCGCTGAATACAATTCAATGAGTAGTCCCAATAACATGTTCACTTACAACAATGTGGTACCGGCTGTGGGTCCAGGAGTAAAATTGGTGCCAGCTGCAAATAAAAGGGGTAATGACCTCacaaaaatattacctaaaccAAACAATATACTACTTAAAAATGTGGGTGGTGTGCAATATGTCAGTCCAGGAAGCAAGCCAATGCATATGGTGGTGCCTAGTTCATCTACAATTGTCcagaaaaatgtacaaaacaaTATGATTATGACAGGTAATGTTCCTAATCTACAGATTCAAGTAGACAGTAAAGGGGGAACATCCTCTGGGACCCACAGCCCGGTACACCATATTACTTCTAGTGGTTTCACTCCAGGCACTACTGTTGTTACTCAGAATTCTCAAATTATTTACCGGGAAATGGCCAACAATGTAGAAGGTAAGCCTTATATGGCTAGTATGCCCACAGTGGTGAGTGCTCATGATAATGTCACAAATTTAGCTCAAACCAGCTCATTGTACCAAAATGTAATGGTAGTTGATCAATTTGGAAACGCCTCATGTATGTATTCATCACCTCAACAGGTAATGCCTAAATGCACGACTACCATTTACAATAAAACTCTATCATCTAGGCAAACTCCAACTTTACCACTTAGGCAAACTCCAACTTTGCCACATAGGCAAACTCCAACTTTGCCACATAGGCAAACTCCAACTTTACCATCTAGGCAAACTCCAACTTTGCCACTTAGACATACTCCAACTTTATCTATAACAGACAGCAAATCTCCTCAAAGTGTAAGTGACGCCAAAACACTTATAATTGAGGTTAGCCCCATTGCACCTCCAGTGTCAGAATTAACATGTGACTCTGCCAGCCCTATTAGATCACCGTCAAACTCAAATAGTTCGTTTGAGAAGCCTGATAAGCAAATGATTGAGGTTGATTCAAAGAGTGAAACACAGAGTGTTACGAAAGGTCTGAAAATTCTTAGTAACATAAAAGTCGAAGTGCCAGTTCAACATCACAAAAATATGGTGAACACTGTTATGGATCTCACAGGGCCTAATGATTCTGATTACCATGTGGAACTTGTGCCATCACCTGAAAAGATATTGCCAGATTTGGATGATACAGATAATGATAACATACACATAGTATCTGATGATAGCATACACCCATCAAACTCTAGTACAGATGATGTCAGATCCACATTTGCTGTGATAAAGTGTAAGTCTTCCCTAAAAGAATTAGACAAAAATATTGATGACAGTAAAATCGACACTGAGTTTTCTGACAGCTGTCCAGTGCCAGATTTAATATGTAATGAGAAACCGTCAATATCACCCTGTAGTGAACTGTCAGAGAATGGTGATAACTCAACTGATCGTACCTCAATATCTCCTAAACCTGCAATTAGTCCACTTAGccataaaaaaataggtattacAGAAAAGAAAATTCAAGTTTTGCAGAAGCCATATAGGCATAATCCATTAAGACTGAACAatatttatgtgaaaaaaaacaaaaagatattGCAGATAAAGAATGCAAAAACCAGTAATCTGAGCAAATCTTCTAAAACATTACCAACTGTACCGTCTTCATCTAACAACAAGACTCCAGAAAATTTTACAATGAATAAATTGCATCAACCAGATAAGAGTGAGAACAGGGAAAAGTCTAGTGTGTTACAGACTATATCAGTGGAGGAGATCAAAGAGAAtgatgaaaatgataataatgagTTTGATGCTGATACAGAGGAACAGTCTATGGACATTGAACCAGTAGCACCTTCCAGTATGATCAAACCCCCTCAGTTCTCTGCAGCTGTAGATTTACAATGCATACAGGTTAAGGAGGAAATAAACACAAGTAACGAAGGGGGGTTTAGTAATCACACAGCAACGTCGGACCGTGATCTTGCACCGATGGAAACATTGCGTCCCATTAATGTTGTTTCCTATGCCAATATGTCGGGTGATTTCGAAGATGATTCAAATGACAAAGAGTTGCTCGACCTTGAAACGGCATCCAAAAACAAACAGTTTGTCAATATGATGAATGAGAATTACTTTGGTGATAATATCTACGCGGACTACTTTACACCGGATCGTGTCGAGACCTTCGAAGCAGAGAGAGAGGCAGCAGGGTACAAGGAGGGCCCAAAAGATGGTATGTATAACATTTGGGGTGAACCGTCTCAGAAGGAGAATGAGAATGAGTTTGTTCTACCTAACTTTATACACGAGAGTTACAAAATAGCGGAGAGTAGTGGAATAGATTATTCTGAGATGGGCGCGGAGGAACAGTGTGATATCGAAGGCGAGCCAGATAGCAAAGACAGCAAAGTGGATGTGTTGAGCGAAAGTCGCAGCGAGAGCGATGCGCCGCTGAACATTTGCTCGGACGAACGCATGCCGCCGCGGGGCGAGCTCAGTGGCCAGGAGAGCAATGGAGACATGGAGTCGCCTTGGGGTGGgATGTATACGGACGTACCCCCGACGGAGCCGTACGACTTGATCGCAAGGGAGAGCTGGGTGTCGGACGGGTCCGACATCGACGTCGGCGAGAAGAGGGAAACGCTAGTGGAAGAGCTCAAGTTCCCCAAGTCTCTATCCCGCGTGTACACGTGCAAGTCATGCGGGATGAAATCGACCTCTCTGAAAGAGCTGCGCGCACACAAGGCATTGGTACACGGCCTGTCAGTACTCCCAACCTGTTCCGCCGCAACCGTGCCAAAGCGGACGGCCAAACACGCCTCGCAAACGTACAGCCGCCTCGTCACCGATAGGAAGATTAAGAAGGAGGAGAAATCGCCTGATGCTGAGATTCTGTCTGGTAATCTCTTAGCAATAGATAAGAAGGAACCTATCACACCAACAATTCTTCAAGTGTTCGACACCTTGGAGGAAGCCAAACCGAAGATCGAAGGGTTGATCAAGATCAAGCAAGAGCCCAAACGGAGACGGAAAGACTTTATATGCCCTACGTGTAAAGTGGACCAGGGCAGTGACAAGGCATTCAATTCTCACCTCAAGATACATCCGTTGGAGTGTCTGACATGCGGGAAGTGTTTCTTTAAAAGAGCCAACATGGCGTTGCATATGAAGATGCATTTAGGAATTAGGAATTACAAATGCGAAGTGTGCGAAAAGCGGTTTATAACTCGACAGAAGTTGAAGGAACACCACAACGTGCACACCGGTCGCCAGCCCATCAAGTGCACCATCTGCGACGACACCTTCCGGAGATACTCCAACATGGTGCAGCATAGGGACCGCCACCACCTGCAGAAGCGCGCCAAGGTGCGTGACTTCGTGTGCCCGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGTTGCTGTGGCACAAGGAGACGCACGACGACAAGCCCAAGGCCTGCCACTACTGCAGCGACAAGTTCGTGCACGCCAGCAGCCTCACGCGCCACGTCCGCCGCTCGCACAACGCCTACTTCCTGTCCGAGCGCCTCAAGGCCAAGGGCGAGAACGTGGCCTGCCCCGTCTGCAAGCAGGTGTGCCTGCGCGCGAACCTGCGCGCGCACCTGGGCACGCACAGCGGCGCGCGGCCCTTCCCGTGCGTGGTGTGCAACAAGTCCTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACATGTCCCGCTCCGCCAAGCCCTACAAGTGCACGCTGTGCGCCAGCGCCTTCGTGCGCCACTCGGAGTTCGTGTCGCACATGAACGCGCACAAGTGCGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGACACGTGCGGGAGCACGAGATGGCGAAGAAGTTCGTGTGCAAGGTCCCCGAGTGCGGTAAGTCCTTCCACCGGAGCTACTACCTGTCCGAGCACATGAAGGTGCACAGCGGGGCGAGGCCGTTCTCGTGCAACATCTGCGGGAAGACCTCGAGCAACAAGTCCAACCATAACAAACATGTCAAGATTCACCATGCGCGGGAGCCGGTTGCTACCGAGGCGTAA
- Protein Sequence
- MDPLLQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCNLTTKAPSYGSRTTTPLHSERSYRSRSRTPAPDDSRWNGSHRSDDRYWRRTPSRTPKSSISSSTRIGASDMRMSDMNFENNCSSVNTGQLSGAPFIMKADKIQQTYQTPPISEFDPQYIYYDQQEDKEIKYSRSAEYNSMSSPNNMFTYNNVVPAVGPGVKLVPAANKRGNDLTKILPKPNNILLKNVGGVQYVSPGSKPMHMVVPSSSTIVQKNVQNNMIMTGNVPNLQIQVDSKGGTSSGTHSPVHHITSSGFTPGTTVVTQNSQIIYREMANNVEGKPYMASMPTVVSAHDNVTNLAQTSSLYQNVMVVDQFGNASCMYSSPQQVMPKCTTTIYNKTLSSRQTPTLPLRQTPTLPHRQTPTLPHRQTPTLPSRQTPTLPLRHTPTLSITDSKSPQSVSDAKTLIIEVSPIAPPVSELTCDSASPIRSPSNSNSSFEKPDKQMIEVDSKSETQSVTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGPNDSDYHVELVPSPEKILPDLDDTDNDNIHIVSDDSIHPSNSSTDDVRSTFAVIKCKSSLKELDKNIDDSKIDTEFSDSCPVPDLICNEKPSISPCSELSENGDNSTDRTSISPKPAISPLSHKKIGITEKKIQVLQKPYRHNPLRLNNIYVKKNKKILQIKNAKTSNLSKSSKTLPTVPSSSNNKTPENFTMNKLHQPDKSENREKSSVLQTISVEEIKENDENDNNEFDADTEEQSMDIEPVAPSSMIKPPQFSAAVDLQCIQVKEEINTSNEGGFSNHTATSDRDLAPMETLRPINVVSYANMSGDFEDDSNDKELLDLETASKNKQFVNMMNENYFGDNIYADYFTPDRVETFEAEREAAGYKEGPKDGMYNIWGEPSQKENENEFVLPNFIHESYKIAESSGIDYSEMGAEEQCDIEGEPDSKDSKVDVLSESRSESDAPLNICSDERMPPRGELSGQESNGDMESPWGGMYTDVPPTEPYDLIARESWVSDGSDIDVGEKRETLVEELKFPKSLSRVYTCKSCGMKSTSLKELRAHKALVHGLSVLPTCSAATVPKRTAKHASQTYSRLVTDRKIKKEEKSPDAEILSGNLLAIDKKEPITPTILQVFDTLEEAKPKIEGLIKIKQEPKRRRKDFICPTCKVDQGSDKAFNSHLKIHPLECLTCGKCFFKRANMALHMKMHLGIRNYKCEVCEKRFITRQKLKEHHNVHTGRQPIKCTICDDTFRRYSNMVQHRDRHHLQKRAKVRDFVCPCGAVFHSRAKLLWHKETHDDKPKACHYCSDKFVHASSLTRHVRRSHNAYFLSERLKAKGENVACPVCKQVCLRANLRAHLGTHSGARPFPCVVCNKSFTTKWNLKLHRWTHMSRSAKPYKCTLCASAFVRHSEFVSHMNAHKCVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909172;
- 90% Identity
- iTF_00636846;
- 80% Identity
- -