Egri004899.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- METTL4
- Assembly
- GCA_017562165.1
- Location
- chr19:17326954-17338994[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0067 20 5.4 0.2 20 46 44 70 29 72 0.85 2 10 0.019 57 4.0 0.0 21 45 73 97 69 104 0.83 3 10 0.00028 0.85 9.8 0.1 21 47 101 127 96 133 0.86 4 10 0.22 6.8e+02 0.5 0.0 21 44 129 152 125 160 0.82 5 10 0.25 7.7e+02 0.4 0.0 21 44 157 180 149 184 0.79 6 10 1.2 3.8e+03 -1.9 0.0 21 45 204 228 200 235 0.80 7 10 0.00036 1.1 9.5 0.1 22 46 233 257 223 265 0.83 8 10 0.048 1.5e+02 2.7 0.0 21 46 289 314 283 320 0.80 9 10 0.015 47 4.2 0.0 21 45 317 341 305 349 0.80 10 10 1.5 4.6e+03 -2.1 0.0 22 44 346 368 340 370 0.74
Sequence Information
- Coding Sequence
- ATGGAAGTAATTCCTATAAATCATTCTTTAAATGAAGCAACATACTCTGGGATAAAACTCTATAaatgtgttatgtgtgaatataCAGCAAAAGAAACAagttctttaaaaaaacatatcagaACTCACACGGGTGAAAAACCATATGAGTGTCATTTGTGTAAATTTGCAACATCGCAAACTGCTAGCTTAAAACGACATATCAGGATGCATACTGGAGAACAACCCTTGAAGTGTGATATCTGTGATTTCAAGACCACAGGGgcaagtaatttaaaaatacacataagaACACATACTGGCGAGAAACCTTACAAGTGTGACATTTGTGATTATACATCATCACAACCCCACAACTTAAAAAGGCATATTAAAACACATACAGGAGAAAAAccttataaatgtcaaatatgTGATTTTAAAACCACAGACTCGAGTTATTTGAAACATCATGCCAGGACACATACTGGGGAAAAACCTTACAAATGTGAGTTGTGTGACTATGCCGCAGCTCAattaaacagtttaaaaaatcaTATGAGCACACACACAGGTGAAAAACAATATGAATGTGACATCAATTTAAAACATCACATTAGAACTCACACTGGGGAAAAGCCATATAAATGTGATAGATGTGATTATAAAACTGCACAGATGAGCtgcttaaaaaaacatataagaaCACACACAGGACAAAAACCATATGAGTGTAACATATGTGACTACACAGCAAAACATTCAAGTAACTTGAAACGACACATTATTAAGGTCCACACTGGGGAAAAGCCATATAAATGTGAGTTGTGTGATTTCAGAGCATGTGACACAGGTGATTTAAAGTATCATTTAACTACTCATACAGGAGAAAAACCCTTTAAATGTGATATATGTGATTATAAAACAGTTCTAGCGGGTACTTTAAGGAAACATTTGAGGACACACACTGGTGAGAAGCCTTATAAGTGTGATTTGTGTGAATACCAAGCAACACAAGCCGGTACTTTAAAAAGGCATATGTTGACACACACAGGAAATAAACCATTTAAATGTGACATGTGTGATTATAAAACAATACAAGCAAGTTGTTTAAAACAGCATGTTACAACTCATGTTGTGACTGAAACGATCAGTATAAAAATAGAGAATCGGAACATGGCTGTTAAGTACCGAAGCAGTAATTGCATATTCTTAGATCACGCGAAATTCGTTAATACCCTTTACAAAAATACGACTGTTGACAAAGATACTCATGCATACGAACTTCTACGGAACTTATTTTCTATTCAAAACAACAAGAAAGCAGGACACAGGAAACGAAGTCATAACTCTAATGGATTCTTAGAAGAAACATCGACAGTAAAACAAATGTATGAGCAGTTTTTAATTGAACTTCCCACAGAGTTCAAAGAATCGTTAGCAGGTGCAGAAACAGTGGATACGTCGTCGGTTCGAGACCTGTCCAAGGAGTTGTTTGAATCTACATTGTTTGAACATGACGGGATCAGTGGAGGAAACAATTCTGATTCTTCTTTGAAATATCCGATTAAGGACGAAGATTTTTTAATACCACAAAATTCaagGTTTTTCTGTGGCTGCGTCAAAGAGCAATGCAAAAAACTCAAAGGTACTCGGTTTGATATCGTAATAGCGGATCCGCCGTGGTGGAACAAATATATAAGGAGACTCAAAAGCGCTAACGATAAATTAAGTTACTCAATGATGTACAACGAAGACATTGCCTCGATACCAGTAAAGGACCTACTCTCTTCCAACTGTATCATAGCCGTGTGGTGTACCAACGCTCCAAGCAACATAGACGCTGTCAAAAAACACTATATTCCCTCAATGGGGAGTCACTTACGTCACCACTTGGTATTGGATGAAGGGAAAGTTGGAGATGTAGAAGTGCCTGACAGACAGTTGATAGTGAGTGTGCCAAGCGCTTTACATTCACATAAGCCACCTTTATTAGATCTCCTTGCCCCATTAGCAAAGACAGAAAATCCACAAACATTGGAACTGTTTGCAAGATACCTCCTTCCCAATACGACGAGTGTTGGATTTGAACCCTTGAAGTGGCAACATGTTTCGCTCTTTGATAAAGTTTCTTGA
- Protein Sequence
- MEVIPINHSLNEATYSGIKLYKCVMCEYTAKETSSLKKHIRTHTGEKPYECHLCKFATSQTASLKRHIRMHTGEQPLKCDICDFKTTGASNLKIHIRTHTGEKPYKCDICDYTSSQPHNLKRHIKTHTGEKPYKCQICDFKTTDSSYLKHHARTHTGEKPYKCELCDYAAAQLNSLKNHMSTHTGEKQYECDINLKHHIRTHTGEKPYKCDRCDYKTAQMSCLKKHIRTHTGQKPYECNICDYTAKHSSNLKRHIIKVHTGEKPYKCELCDFRACDTGDLKYHLTTHTGEKPFKCDICDYKTVLAGTLRKHLRTHTGEKPYKCDLCEYQATQAGTLKRHMLTHTGNKPFKCDMCDYKTIQASCLKQHVTTHVVTETISIKIENRNMAVKYRSSNCIFLDHAKFVNTLYKNTTVDKDTHAYELLRNLFSIQNNKKAGHRKRSHNSNGFLEETSTVKQMYEQFLIELPTEFKESLAGAETVDTSSVRDLSKELFESTLFEHDGISGGNNSDSSLKYPIKDEDFLIPQNSRFFCGCVKEQCKKLKGTRFDIVIADPPWWNKYIRRLKSANDKLSYSMMYNEDIASIPVKDLLSSNCIIAVWCTNAPSNIDAVKKHYIPSMGSHLRHHLVLDEGKVGDVEVPDRQLIVSVPSALHSHKPPLLDLLAPLAKTENPQTLELFARYLLPNTTSVGFEPLKWQHVSLFDKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635624;
- 90% Identity
- iTF_00635624;
- 80% Identity
- iTF_00635624;