Egri008278.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:8756838-8770732[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0034 10 6.3 0.0 22 52 23 53 15 54 0.80 2 9 0.055 1.7e+02 2.5 0.1 21 47 50 75 47 81 0.85 3 9 0.025 78 3.5 0.2 18 45 75 102 70 106 0.86 4 9 0.017 51 4.1 0.0 18 46 103 131 101 134 0.90 5 9 0.0014 4.2 7.6 0.0 21 45 134 158 131 161 0.92 6 9 0.00043 1.3 9.2 0.0 21 45 162 186 158 193 0.86 7 9 0.061 1.9e+02 2.3 0.1 21 47 190 216 186 221 0.84 8 9 0.0048 15 5.9 0.0 21 45 218 242 214 248 0.88 9 9 0.32 9.6e+02 0.0 0.0 23 45 248 270 244 276 0.84
Sequence Information
- Coding Sequence
- ATGGAGATTACTATAGAAATTACAAGAATTGAAGAAAATGATGGACAACcaagatacagtacaaataaaaaatggcatAGTTGCCCAATATGTGATTTTAAGTCTACCCAACAcggtaacataaaaaaacacataaaaatccACACAGGCGAAAAACCTTTCAAGTGTGACCTATGCGATTACAAGGCAACACAGTTATGTCACTTAAAAAGACACATAAAAAGGCACACTGGTGagaaaccatatgaatgtgacaTCTGCGATTACCGAGCAACTCAATTAGGTCATCTAAGAGCTCATATAAAAAGACATACAGGAGAGAAGCCTCACAAATGCGATATGTGTGATTTTAAATCGACGCAAGCAAGCCATCTAAAACAGCATCTAAAAATACACACGGGGGAAAAGCCACACAAATGTCATATGTGTGATTTTAAATCTGCACAATCAAgcaatttaaaacaacatttaaagacacattcaGGTGAAAAACCACACAAATGTCCTATGTGCGAATTTAGGACGGCACAAGCGAGCAACCTAAAAGAACACATGAAGAAACATACAGGTGAAAAGCCATTTAAATGTGAAATGTGTGATTATAAAGCAACACAGCTATGTCATATAAAAAGACATTTAAAAACACATACAGGTGAAAAGCCAcataaatgtgatatgtgtgattatcgAACTGCAGAGGCAAGTAATTTAAAACGACATTTACTCATTCACGATGGAGAGAAGAAGTTTAAATGTGATTTATGTGATTATGAGGCAAAACAAGTTTATCATTTGAAACGACATATAAAAACACATGTGAGTGACAAGATCGtggaatgtgatatgtgtggtTTTACAACCATGCAAAAATATGACTTAATACAACACATTAAGGCTCATTCTCAGGAAACTACAATTTTTGGTGCccataattttaaaactacacCTACTAGGATTTTGACGGAACATTTAGAAACACTTAACAAATTAAATGTACACAAATGTAAAGTATGTGATTATTGTACGATCCATGAAAGTATTTTAAAAGAGcatgaaaaaaaacattctgtagaaaatacatataaatgtgatatgtgtgaattTAGAGCAACACACGAAACTCATCTAAAAGAACATATAAAATCACATTTTAATCCATTAAATGTACACAAATGTAATATGTGTAATTTTGAAACAAGTAGTGATAGTGGTTTGGTAGATCACATAAAAACTCATTTTGTTGAATTAAATGTACATAAATGTACTGTTTGTAGTTttgaaacgaaaaataaaaatattttaatagaacACACGAAAACACATGAAGAAAAGACAcataaatgtgatatgtgtgactTTGAAACGAGAAATGAGAACGTTTTAATAGAACACATAAAAACTCATTTTGTTGGATTAGCTGTCTACAAATGTCAAATGTGTAGTTATGAAACAAGAATTGAAAGTCTTTTGACAGAACACACTAAAACTCACAGATCTAATACACATAAACCTAATTTGAGTAATTTTGAATCAAAACTTAAAAGTCTTTTGACAGAACCCACTAAAACACACAAACAGAATACACATAAATGTGATATGTGCAATTTTAGAACAACACATGAAAGTTTTCTGAAAGATCACATAAAAACTCACATCATATTAAATACACACAAATGCAATATGTGCGATTATAAGACTACAGATGAAACTGTTTTAGCAGAACATGTAAAAACGCATTCAGAAGAAAGTTCAcataaatgtgatatgtgtgaattTAGAACACCGTATGAAAGTATTCTTAAACAACACATAAAAACTCATTTaaatgtaaatctataa
- Protein Sequence
- MEITIEITRIEENDGQPRYSTNKKWHSCPICDFKSTQHGNIKKHIKIHTGEKPFKCDLCDYKATQLCHLKRHIKRHTGEKPYECDICDYRATQLGHLRAHIKRHTGEKPHKCDMCDFKSTQASHLKQHLKIHTGEKPHKCHMCDFKSAQSSNLKQHLKTHSGEKPHKCPMCEFRTAQASNLKEHMKKHTGEKPFKCEMCDYKATQLCHIKRHLKTHTGEKPHKCDMCDYRTAEASNLKRHLLIHDGEKKFKCDLCDYEAKQVYHLKRHIKTHVSDKIVECDMCGFTTMQKYDLIQHIKAHSQETTIFGAHNFKTTPTRILTEHLETLNKLNVHKCKVCDYCTIHESILKEHEKKHSVENTYKCDMCEFRATHETHLKEHIKSHFNPLNVHKCNMCNFETSSDSGLVDHIKTHFVELNVHKCTVCSFETKNKNILIEHTKTHEEKTHKCDMCDFETRNENVLIEHIKTHFVGLAVYKCQMCSYETRIESLLTEHTKTHRSNTHKPNLSNFESKLKSLLTEPTKTHKQNTHKCDMCNFRTTHESFLKDHIKTHIILNTHKCNMCDYKTTDETVLAEHVKTHSEESSHKCDMCEFRTPYESILKQHIKTHLNVNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635621;
- 90% Identity
- iTF_00635621;
- 80% Identity
- iTF_00635621;