Basic Information

Insect: Ectropis grisescens
Gene Symbol: -
Assembly: GCA_017562165.1
Location: chr24:8756838-8770732[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00096 0.054 14.0 3.1 1 23 26 48 26 48 0.97

2 19 0.0016 0.088 13.3 6.1 1 23 54 76 54 76 0.99

3 19 1.8e-05 0.001 19.4 0.6 1 23 82 104 82 104 0.99

4 19 0.00027 0.015 15.8 4.8 1 23 110 132 110 132 0.98

5 19 0.00015 0.0083 16.6 6.2 1 23 138 160 138 160 0.98

6 19 2e-05 0.0012 19.3 2.0 1 23 166 188 166 188 0.98

7 19 0.016 0.93 10.1 6.0 1 23 194 216 194 216 0.99

8 19 4.4e-05 0.0025 18.2 0.9 1 23 222 244 222 244 0.98

9 19 0.0001 0.0056 17.1 2.6 1 23 250 272 250 272 0.99

10 19 0.00055 0.031 14.8 0.1 2 23 279 300 278 300 0.96

11 19 0.55 31 5.3 6.5 1 23 333 355 333 355 0.97

12 19 0.0052 0.29 11.7 4.3 1 23 361 383 361 383 0.99

13 19 0.0021 0.12 12.9 1.3 1 23 390 412 390 412 0.98

14 19 0.4 23 5.7 3.0 1 23 419 441 419 441 0.98

15 19 0.0052 0.29 11.7 1.0 1 23 446 468 446 468 0.98

16 19 0.0056 0.31 11.6 1.2 1 23 475 497 475 497 0.99

17 19 0.005 0.28 11.8 6.3 1 23 529 551 529 551 0.98

18 19 0.0039 0.22 12.1 1.3 1 23 557 579 557 579 0.98

19 19 0.069 3.9 8.2 2.0 1 23 585 607 585 607 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00096	0.054	14.0	3.1	1	23	26	48	26	48	0.97
2	19	0.0016	0.088	13.3	6.1	1	23	54	76	54	76	0.99
3	19	1.8e-05	0.001	19.4	0.6	1	23	82	104	82	104	0.99
4	19	0.00027	0.015	15.8	4.8	1	23	110	132	110	132	0.98
5	19	0.00015	0.0083	16.6	6.2	1	23	138	160	138	160	0.98
6	19	2e-05	0.0012	19.3	2.0	1	23	166	188	166	188	0.98
7	19	0.016	0.93	10.1	6.0	1	23	194	216	194	216	0.99
8	19	4.4e-05	0.0025	18.2	0.9	1	23	222	244	222	244	0.98
9	19	0.0001	0.0056	17.1	2.6	1	23	250	272	250	272	0.99
10	19	0.00055	0.031	14.8	0.1	2	23	279	300	278	300	0.96
11	19	0.55	31	5.3	6.5	1	23	333	355	333	355	0.97
12	19	0.0052	0.29	11.7	4.3	1	23	361	383	361	383	0.99
13	19	0.0021	0.12	12.9	1.3	1	23	390	412	390	412	0.98
14	19	0.4	23	5.7	3.0	1	23	419	441	419	441	0.98
15	19	0.0052	0.29	11.7	1.0	1	23	446	468	446	468	0.98
16	19	0.0056	0.31	11.6	1.2	1	23	475	497	475	497	0.99
17	19	0.005	0.28	11.8	6.3	1	23	529	551	529	551	0.98
18	19	0.0039	0.22	12.1	1.3	1	23	557	579	557	579	0.98
19	19	0.069	3.9	8.2	2.0	1	23	585	607	585	607	0.98

Sequence Information

Coding Sequence: ATGGAGATTACTATAGAAATTACAAGAATTGAAGAAAATGATGGACAACcaagatacagtacaaataaaaaatggcatAGTTGCCCAATATGTGATTTTAAGTCTACCCAACAcggtaacataaaaaaacacataaaaatccACACAGGCGAAAAACCTTTCAAGTGTGACCTATGCGATTACAAGGCAACACAGTTATGTCACTTAAAAAGACACATAAAAAGGCACACTGGTGagaaaccatatgaatgtgacaTCTGCGATTACCGAGCAACTCAATTAGGTCATCTAAGAGCTCATATAAAAAGACATACAGGAGAGAAGCCTCACAAATGCGATATGTGTGATTTTAAATCGACGCAAGCAAGCCATCTAAAACAGCATCTAAAAATACACACGGGGGAAAAGCCACACAAATGTCATATGTGTGATTTTAAATCTGCACAATCAAgcaatttaaaacaacatttaaagacacattcaGGTGAAAAACCACACAAATGTCCTATGTGCGAATTTAGGACGGCACAAGCGAGCAACCTAAAAGAACACATGAAGAAACATACAGGTGAAAAGCCATTTAAATGTGAAATGTGTGATTATAAAGCAACACAGCTATGTCATATAAAAAGACATTTAAAAACACATACAGGTGAAAAGCCAcataaatgtgatatgtgtgattatcgAACTGCAGAGGCAAGTAATTTAAAACGACATTTACTCATTCACGATGGAGAGAAGAAGTTTAAATGTGATTTATGTGATTATGAGGCAAAACAAGTTTATCATTTGAAACGACATATAAAAACACATGTGAGTGACAAGATCGtggaatgtgatatgtgtggtTTTACAACCATGCAAAAATATGACTTAATACAACACATTAAGGCTCATTCTCAGGAAACTACAATTTTTGGTGCccataattttaaaactacacCTACTAGGATTTTGACGGAACATTTAGAAACACTTAACAAATTAAATGTACACAAATGTAAAGTATGTGATTATTGTACGATCCATGAAAGTATTTTAAAAGAGcatgaaaaaaaacattctgtagaaaatacatataaatgtgatatgtgtgaattTAGAGCAACACACGAAACTCATCTAAAAGAACATATAAAATCACATTTTAATCCATTAAATGTACACAAATGTAATATGTGTAATTTTGAAACAAGTAGTGATAGTGGTTTGGTAGATCACATAAAAACTCATTTTGTTGAATTAAATGTACATAAATGTACTGTTTGTAGTTttgaaacgaaaaataaaaatattttaatagaacACACGAAAACACATGAAGAAAAGACAcataaatgtgatatgtgtgactTTGAAACGAGAAATGAGAACGTTTTAATAGAACACATAAAAACTCATTTTGTTGGATTAGCTGTCTACAAATGTCAAATGTGTAGTTATGAAACAAGAATTGAAAGTCTTTTGACAGAACACACTAAAACTCACAGATCTAATACACATAAACCTAATTTGAGTAATTTTGAATCAAAACTTAAAAGTCTTTTGACAGAACCCACTAAAACACACAAACAGAATACACATAAATGTGATATGTGCAATTTTAGAACAACACATGAAAGTTTTCTGAAAGATCACATAAAAACTCACATCATATTAAATACACACAAATGCAATATGTGCGATTATAAGACTACAGATGAAACTGTTTTAGCAGAACATGTAAAAACGCATTCAGAAGAAAGTTCAcataaatgtgatatgtgtgaattTAGAACACCGTATGAAAGTATTCTTAAACAACACATAAAAACTCATTTaaatgtaaatctataa
Protein Sequence: MEITIEITRIEENDGQPRYSTNKKWHSCPICDFKSTQHGNIKKHIKIHTGEKPFKCDLCDYKATQLCHLKRHIKRHTGEKPYECDICDYRATQLGHLRAHIKRHTGEKPHKCDMCDFKSTQASHLKQHLKIHTGEKPHKCHMCDFKSAQSSNLKQHLKTHSGEKPHKCPMCEFRTAQASNLKEHMKKHTGEKPFKCEMCDYKATQLCHIKRHLKTHTGEKPHKCDMCDYRTAEASNLKRHLLIHDGEKKFKCDLCDYEAKQVYHLKRHIKTHVSDKIVECDMCGFTTMQKYDLIQHIKAHSQETTIFGAHNFKTTPTRILTEHLETLNKLNVHKCKVCDYCTIHESILKEHEKKHSVENTYKCDMCEFRATHETHLKEHIKSHFNPLNVHKCNMCNFETSSDSGLVDHIKTHFVELNVHKCTVCSFETKNKNILIEHTKTHEEKTHKCDMCDFETRNENVLIEHIKTHFVGLAVYKCQMCSYETRIESLLTEHTKTHRSNTHKPNLSNFESKLKSLLTEPTKTHKQNTHKCDMCNFRTTHESFLKDHIKTHIILNTHKCNMCDYKTTDETVLAEHVKTHSEESSHKCDMCEFRTPYESILKQHIKTHLNVNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00635935;
90% Identity: iTF_00635935;
80% Identity: iTF_00635935;