Egri016606.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_017562165.1
- Location
- chr10:4524454-4548108[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-72 4.6e-68 229.7 18.2 1 258 121 373 121 398 0.94 2 2 0.45 8.2e+03 -4.2 8.1 131 161 430 464 411 478 0.41
Sequence Information
- Coding Sequence
- ATGGGGCGTCGAGCGGCGGAGGCCACGCCTGATAACAGCGACGAGGAGAGCGGAGACGCCTTCACCGACGGAGACTTCGGGGACTCCGACGACGACACCCTCGTCCAACACGACAGCAAGTCTTCCAACATCCCCGTCAACGAGACTATCAATAAAGCGATAGATAAAACGCTCACCAACGGCAACTGCTCCCACAACGGACATGACACCACTCCGGAGGACCAGCCCAGAGTGAACGGACGTCAGAATAGTGTGAATAGTAGTGATGTGGAAAACGTTAGTGCGTCGGAAGTGCGGAGAGACTCTCATGGAGATCAAAACCCTTCGATCGTGGGCATCTTAGGAGACCAGCACAACCATGCGGAGCAGCGgctggcggcgcggcgcgcggcgcgggcggaGGCGCGCGAGATCCGCATGCGCGAGCTCGAGCGCCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCGTACGACATGTACGCGGAGACGGTggggcggcgcggcgggccGCGGCTGGCGGCGCTGGCGCCGGCGCCCGCGCTCGCGCACTCGCCGCGCCGGACGTCCGAGGACTCCGCCGACGACGCCTTCAACGTTAAGGACCTCAGGCACGAGTTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTGAAGGACCGCATCCTGGAGCTGCAGGAGGAGCACGCGCAGCTGCAGCGCGAGCACAGAGAAAAGTGCTCGGTGCACGAGCGTCTGCGGCGCGAGCAGGCGGGCACGGAGCGCGAGCTGGCCCGCGCGCGGGACGCGGTGCGCGCGCGCGAcgcggccgcggccgccgccggGTTCTCGTTCGCGGAGGCCGCGCCCGGCGCCACGCACGCCGAGGGGTTCGGCGCCGTGCCGCCGCTCGCGCTGCTGTCGCACCTGCACGAGCAGGCGCTCGACGACCACGGCGAGGGCACGCTCGACGTGCGGTTGCAGAGGCTGGTgtcggccaagtgcgagttggagtCGGAGGTGCGCAAGCTGAAGCTGGCGCTCAACGAGGAGCGCGCCGCGCGCCAGAACGGCGGCGACGCGCCCGACCTGGAGCCCGAGTTGGAGGGTCTCCGCAAGTCCGTGTCGGAGGCGAaggggcgcgcggcgcgcgcggagGCCGAGGCGGCGCTGCAGGCGGCGGCCGTGGCGCGGCTCGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGGACGCCACCGACTCCAGCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCGCGGGAGGCTCTGAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTGATGAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCTGCGTTACTGAAGGACCTGTGA
- Protein Sequence
- MGRRAAEATPDNSDEESGDAFTDGDFGDSDDDTLVQHDSKSSNIPVNETINKAIDKTLTNGNCSHNGHDTTPEDQPRVNGRQNSVNSSDVENVSASEVRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGPRLAALAPAPALAHSPRRTSEDSADDAFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEHAQLQREHREKCSVHERLRREQAGTERELARARDAVRARDAAAAAAGFSFAEAAPGATHAEGFGAVPPLALLSHLHEQALDDHGEGTLDVRLQRLVSAKCELESEVRKLKLALNEERAARQNGGDAPDLEPELEGLRKSVSEAKGRAARAEAEAALQAAAVARLEAQLQRLRARQDATDSSEEQLKQERRKLQREAREALNRVEELETENSHLMKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- -
- 80% Identity
- -