Eden017856.1
Basic Information
- Insect
- Earota dentata
- Gene Symbol
- bab1
- Assembly
- GCA_027574905.2
- Location
- JAODGB020040878.1:1-1626[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-14 2.1e-11 43.5 0.0 3 45 370 412 368 412 0.91
Sequence Information
- Coding Sequence
- ATGTACAGCCACGTGCAGCATTACTGCCTGCGGTGGAACAACCACCGCTCCAACCTGCTCACCGTCTTCGAGGAGCTGCTGCAGAACGAGGCGTTCACGGACGTGACGCTCGTCTGCGACGGCGGCAGCCCGATCAAGTGCCATCGCATGGTGCTCGCCGCCTGCTCGCCGTACTTTCAGAACCTCTTCACCGACCTGCCCTGCAAGCATCCGGTGGTGGTGCTGAAGGACGTGCGCTATTCGGATATCAAGGCCATCCTGGAGTACATGTACCGCGGCGAGGTGAACGTCGGCCAGCATCAGCTCGCCGACCTGCTGCgggtggcggaggcgctcaAAGTCAAGGGCCTGGTGGAGGAGAAGCGCGGCAGCGTCTCCAGCGATGTGGTGCAGACGAACGCCGACCATCCGAGCCCGACGGGCGTGAGCACCTCGAGCGCCTCCAACAATCAGTCGACGGTGCACAGCAGCAGTGCGGAGTCGCCGCCGCACTCGACGAATGGCTTCGTCGGCGCTTACAAGGACCCGTACATGTATCCGACTTCCGGGGGCAATAAGAAGAGCACACCGCCCAGCATGCCGCCGCAGAGTTCACCGTCGCCCTCACCACGGATGAATATACCCATGTGGCCGGTCGGCGGGCTGCCAATCCATCCCAGCCATTCGCCCAGCGTGCATCCCAGCaacaatgcggcggcggcgcaggcggcggcgatgctCAGCAACTGCTACCAGGCCGGCAGCACCGACATGAACCCGCTCAAACGAAAGAAGCTCTCCAGCTTGCTGATGAGTCGCGACACGCCCATCCTGCGGACGGTCCTCGGCCAGGCCGACTCGTCCCAGCCCGTCAGTCTCGTGTGCCATCCGGACGGCAGCCCCACCAACGTGAACTCCAACGGCGTCGAGGACGAACTCCCCGAAAAGCACATCAAAAACGAGCCGTCCGAGGGCGCGCAGTCGCCGTTCACGGACATCTCCATGGAGTACGACGACAAGTCCAAGCTGGGCCTGACTTCCTCCTACGCCAGCGGCATGTCCGGCATCGCCACCTACGTGCCCGGCAACGTCAAGCCGGAGTGGAAGCGCTACAAGCAGTACACGCGCAACGACATCATGTCCGCCATTGACGCGGTGCGCAACGGCATGTCCGCCCTGCAGGCGGCGCGCAAGTACGGCGTGCCGTCGCGCACCCTCTACGACAAGGTGAAGAAGCTGGGCATCACGACGGGGCGGCCCTTCaagcgcggcggcaacggcagCCTCGGCTTCCCGTACGGCATCAGCGGCACCAGCTCGCCGTTCGGCATGGACTCCGCCGACGAGCacagcatcaacaacaactcCAGCCTGCTGGAGGCGAGCAGCATACTGCAGCATGCGCTCGACGCGCGCGACGACAAGGAGGCGCTGCAGGCGATGAtcgccgcgcacgcggcgATGAGCGGCCACAACACCAGCCCGAACAACAACTCGTCGGCGCGCACCACCAGCCCGCTGCCCAGCCACCTCAAGTACATGAGCCGCATGAACAGCCTGCCGGCCTCGCCGC
- Protein Sequence
- MYSHVQHYCLRWNNHRSNLLTVFEELLQNEAFTDVTLVCDGGSPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVRYSDIKAILEYMYRGEVNVGQHQLADLLRVAEALKVKGLVEEKRGSVSSDVVQTNADHPSPTGVSTSSASNNQSTVHSSSAESPPHSTNGFVGAYKDPYMYPTSGGNKKSTPPSMPPQSSPSPSPRMNIPMWPVGGLPIHPSHSPSVHPSNNAAAAQAAAMLSNCYQAGSTDMNPLKRKKLSSLLMSRDTPILRTVLGQADSSQPVSLVCHPDGSPTNVNSNGVEDELPEKHIKNEPSEGAQSPFTDISMEYDDKSKLGLTSSYASGMSGIATYVPGNVKPEWKRYKQYTRNDIMSAIDAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTGRPFKRGGNGSLGFPYGISGTSSPFGMDSADEHSINNNSSLLEASSILQHALDARDDKEALQAMIAAHAAMSGHNTSPNNNSSARTTSPLPSHLKYMSRMNSLPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629879; iTF_00620485; iTF_00620642; iTF_00049354; iTF_00049193; iTF_00902157; iTF_00902345; iTF_00083829; iTF_00083988; iTF_00022264; iTF_00022127; iTF_00631423; iTF_00631576; iTF_00904192; iTF_00904024;
- 90% Identity
- iTF_00629879;
- 80% Identity
- iTF_00629879;