Basic Information

Insect: Netelia melanura
Gene Symbol: Snai1
Assembly: GCA_964007305.1
Location: OZ023258.1:14722565-14725532[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.4 4e+02 2.4 0.2 3 17 65 79 63 80 0.81

2 13 0.00037 0.043 14.9 0.1 1 23 254 276 254 276 0.95

3 13 2.7e-05 0.0031 18.5 1.2 1 23 284 306 284 306 0.98

4 13 4.1e-06 0.00048 21.0 0.2 2 23 314 335 313 335 0.97

5 13 1.1e-05 0.0013 19.6 0.6 1 23 341 363 341 363 0.98

6 13 2.8e-05 0.0033 18.4 2.0 1 23 370 392 370 392 0.98

7 13 2.1e-05 0.0024 18.8 1.3 1 23 398 420 398 420 0.96

8 13 1.2e-05 0.0014 19.5 0.2 1 23 426 448 426 448 0.98

9 13 6.3e-07 7.3e-05 23.6 1.2 1 23 454 477 454 477 0.96

10 13 3.3e-06 0.00038 21.3 0.5 1 23 483 506 483 506 0.96

11 13 5.1e-06 0.00059 20.7 2.8 1 23 512 534 512 534 0.99

12 13 8.2e-05 0.0095 16.9 0.4 1 23 540 562 540 562 0.94

13 13 0.00026 0.03 15.4 0.1 1 23 568 592 568 592 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.4	4e+02	2.4	0.2	3	17	65	79	63	80	0.81
2	13	0.00037	0.043	14.9	0.1	1	23	254	276	254	276	0.95
3	13	2.7e-05	0.0031	18.5	1.2	1	23	284	306	284	306	0.98
4	13	4.1e-06	0.00048	21.0	0.2	2	23	314	335	313	335	0.97
5	13	1.1e-05	0.0013	19.6	0.6	1	23	341	363	341	363	0.98
6	13	2.8e-05	0.0033	18.4	2.0	1	23	370	392	370	392	0.98
7	13	2.1e-05	0.0024	18.8	1.3	1	23	398	420	398	420	0.96
8	13	1.2e-05	0.0014	19.5	0.2	1	23	426	448	426	448	0.98
9	13	6.3e-07	7.3e-05	23.6	1.2	1	23	454	477	454	477	0.96
10	13	3.3e-06	0.00038	21.3	0.5	1	23	483	506	483	506	0.96
11	13	5.1e-06	0.00059	20.7	2.8	1	23	512	534	512	534	0.99
12	13	8.2e-05	0.0095	16.9	0.4	1	23	540	562	540	562	0.94
13	13	0.00026	0.03	15.4	0.1	1	23	568	592	568	592	0.94

Sequence Information

Coding Sequence: ATGACGGCAGATTCCTCGAAGGATTCTACTCACTGCCTTATATGTAACAGCAAAGTTGGTGTATCAACTCGTAACAGTGTCCGCATATTTAATGATACATCTGTTACCACCTCTGACAAACCTCTAATTCAGACAATTTGCTCTGTATTAGAAAAAGATATCAATGAAGAGAATGTACATTCGTTAGTTATATGTAAAAAATGCTACAAATTGTTCAGTGAGTTCGACGAACTTGAGAATCGATTGGGTGAAATAAGATTGGAAATTTATACAAACTACGAgagaacaatgaaaaaaataattccagaAATTCGTATTCAGGATGAATACAATGATCATGATTACATAGACAATTCAGATGCTCATCTTGTTGAATCTCTGGACCTGAAATACGATGAGAAGGAGAACGACGTTTCTTCACCCATTAAAAATGCAGAGAGCATCGAAAACATTACTGAGTATTTAGTTCATGATGTTGAGAAAACTCGGATAGGAAATGATGAATATATAGAAGCCCATGACGAGGTCATAGTGAAGCTTGAGGATGCATCAACAGAATTGGACCAAATGAATgattcgaagaaaaatcagGCTAAAAAGGTTCAAAAGAACATAAAGCTAGAAGATACAGATGAACCAATTGTATCGAGAGTCGGTGGAGAGTACAAGTGCCTCTTGTGCACAAACGATGATGTTCGAGTTATTGGTGATGCAAAAGTCATTGTCTCGCATATTAAAGATATACACGATGTGCGCTTATATATCTGCGATATATGTGgaatggattttaaaaaaagaaacgaattatCAATTCATCTGGATGATCATGTTGCCAAGGAGGAAGGAGATTTTCAATGCGAGGTTTGCAACAGGATATTCAGCAATTTGCGACTATTTCGTATTCACAAGCGTATCCATTATCCTCAAGCTAAATCGTGGCCTTGCGAGACTTGTGGCAAAAAGTACAGCTCGAAAAATCTGTTGGAAGAACACATAAACACGCATACGGGTATGCGTCCATACGTTTGCGAGTCGTGTGGCAAAGACTTCGCTTCGAAATACACTTATAAGGCTCATGCTAAGACTCACGAGGTACGGCCCCGTCCGTTTGAGTGTAGCCAGTGCAACAAATCATTTCTTAGCCAACAAAATCTTAATCAGCACGAGAGAACGCATAATGGTGTCAAGGAATACGTTTGTCATCAATGTGGAAAGGCATTTGGCTCGTATCACAATCTTGAAGTTCACAACATTGTTCATACTGGCTACAAGCCCTACATATGCAGAATGTGCGGTAAAGCATTTGCACGAAAAGCCGAGATAAGAGACCATGAGAGAACTCATACAGGAGAAAAGCCTTATCAGTGTGAATTCTGTGGTGCAACCTTTAGTCAAAGATCGAATTTGCAATCACACAAGAGAGCAACGCACTACAATGATAAGAGGTATAAGTGTGACGACTGCGGTAAAGGATTCAAGAGGCGAAGACTTTTGGATTATCACATAAAAGCTGCACATACGGGGGAGAGACCGTACAAATGTGAGACATGTACAGCCACTTTCGTCTATCCGGAACACTTTAAGAAACATATGCGTATTCATACAGGCGAAAAGCCGTACTTGTGCGAGGTTTGTGGAAAAGCTTTCAACAGCCGTGATAACCGGAATGCTCATCGTTTCATTCATAGCGACAAAAAGCCATACGAGTGTCTCGTATGCGGGATGGGATTCATGAGAAAACCTCTTCTGTATGCTCATATGCAGACGCAGGGACATCTTAATGACACGATAGTTGTTAATCAACCGAGACTAACTACCGAGGATGATCAAGTAATCAATATCCCGGATGGCGATGTTGAATTATTAATGGAAGGAACAGAGACAGAACAGCTTGAAGAGACCGAGTTGTACGTGGCTGAGCTTAAAGATCACGTTATTATACGACGTGGCGATGAGAACATTTATCAGGAGGAAAGTGTATTGGGCATATCGGCTGAAGAGAACGTGGAACAGGGAGAAATTGATCATCAGCTCGTGGTAGATGGACAgATGTCTTTCGAGGATGCCGAAACGATGGATTGTAAACCGGAAGATACCGAAGAGCGACAGGTCGAAGAGGTCTATTACAATACGGCCGAAGATGGTGCGACATTAGTAGTACCGACGACATCCGATTACAAAGATATcgttaacgataaaaaaaattcagttaGACTCGTACAAATACGAATACCTTCAAGTTCGGCCGGTGAGGCGCGAAGCTGGCTCAGTCTCGTACAAAATACACAATAG
Protein Sequence: MTADSSKDSTHCLICNSKVGVSTRNSVRIFNDTSVTTSDKPLIQTICSVLEKDINEENVHSLVICKKCYKLFSEFDELENRLGEIRLEIYTNYERTMKKIIPEIRIQDEYNDHDYIDNSDAHLVESLDLKYDEKENDVSSPIKNAESIENITEYLVHDVEKTRIGNDEYIEAHDEVIVKLEDASTELDQMNDSKKNQAKKVQKNIKLEDTDEPIVSRVGGEYKCLLCTNDDVRVIGDAKVIVSHIKDIHDVRLYICDICGMDFKKRNELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQAKSWPCETCGKKYSSKNLLEEHINTHTGMRPYVCESCGKDFASKYTYKAHAKTHEVRPRPFECSQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSYHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVINIPDGDVELLMEGTETEQLEETELYVAELKDHVIIRRGDENIYQEESVLGISAEENVEQGEIDHQLVVDGQMSFEDAETMDCKPEDTEERQVEEVYYNTAEDGATLVVPTTSDYKDIVNDKKNSVRLVQIRIPSSSAGEARSWLSLVQNTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00629279;
90% Identity: iTF_01057821;
80% Identity: -