Dtit012757.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- Znf48
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2609764-2611386[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 31 6.4 0.0 21 44 173 196 162 201 0.84 2 12 0.0063 18 7.2 0.1 18 48 198 228 195 232 0.84 3 12 0.093 2.7e+02 3.4 0.1 21 45 229 253 227 261 0.75 4 12 0.26 7.5e+02 2.0 0.0 22 44 258 280 245 284 0.79 5 12 0.035 1e+02 4.8 0.0 21 44 285 308 277 312 0.84 6 12 0.023 68 5.3 0.1 11 45 303 337 296 344 0.86 7 12 0.4 1.2e+03 1.4 0.1 21 32 341 352 337 367 0.75 8 12 0.0005 1.5 10.7 0.7 21 46 369 394 365 400 0.86 9 12 0.16 4.8e+02 2.6 0.1 21 33 397 409 392 423 0.75 10 12 0.11 3.2e+02 3.2 0.0 21 33 453 465 449 479 0.72 11 12 0.39 1.1e+03 1.4 0.1 22 45 482 505 477 509 0.87 12 12 0.0057 17 7.3 0.2 23 45 511 533 507 538 0.88
Sequence Information
- Coding Sequence
- ATGGCCATAGAGTATGATGAATTGCATGAACATTACGATAATAACTGCGAAGAATACAATAGTGCCGCacatattaaattagaagattgtATAGTTCAAACGGGGGACtttcttgattcaaaagcaggaatatctttgataagcGACGACATCTTAGCACAAGAGGTCTCATTGGTAAATATTAAAGATGAAAATTTCGATGAGCAATTAAGCAAGGATATCATTAGTACCGAGGACTGTGAAAAATTTAATAGTGATGTagatattaaattagaagattctATAGTTGAAACAGGAGATTATCTTGATTCAAAAGTAGGAATATCGTTGATAAGTGATCACAGCGTAGCACAAGGTGAAAATTCGAACGACTATTACAATAAAAGCTTTAAGCACAAACAGCTATTTCATCATGTTAGGAGCATGCATTTGCTCGGGAAGATTCACATGTGTAGCTATTGCGGGCGGACGTTTCGTCGCAAGACCGATCTGACGAAACATGTTAgaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaaatcgttTTCTGAGAAGAGTAACCTGACGGCTCATATTAGAAGACACACGGATGAAaaaccttttacttgcgagatttgtaagaAGTCATTTTGTGACAAGAATAGATTGAAGAAACATATTACAATACACACGGGTGAAAAGCCTTtcacttgcgagatttgtaagaACTCATTTTGTGAGAAAGGTGGACTGACAAAACATGTTAGAAATCACAACAATGTAaaaccttttacttgcgagatttgtaagaAATCATTTTGCGAGAAGGGTAGACTGAAGAAACATATTACAACACACAcgggtgaaaagccttttacttgcgagatttgtaagaAGTCATTTAGTGAGAAGGATGGACTGAAGAAGCATATTACAAGACACGCACGTGAAAAGCCTTTTAGTTGCGAAGCTTGTAAGAAGTCATTTCGTGAGAAGTATGTACTGATGAGACATATTAGAACACACTCCGGTGAAaaaccttttacttgcgaggtttgtaaaaagtcatttgcTAGGAAGAATGGACTGACGATTCACATGATAAAACACACCCGCGAacagccttttacttgcgagatttgtaaaaggTCATTTTGTGAGAAGGGTAGACTGAGGAGACATATTAgaacacacaccggtgaaaagccttttacttgcgagatttgtaagaAATCATTTTGCGGGAAGGATGGACTGAAGAATCATATTAGAACACACACcggtaaaaaaatgtttacttgcgAGGTCTGTAAAAAGTCGTTTACTGGTAAGAGTGGACTCACGATTCATATGATaaaacacaccggtgaaaagccttttacttgcgaaatttgcaaaaagtcatttTTTCGGAAGAGTGGTCTAAAAACTCACACGAAATATCACACCGGTGAAAAACGTTTTACTTGTGAAGTTtgtaaaatgcaatttttctGCTCTGCATATCTACAAAGACATATGGCAGTGCATATGGGGGATTGCCCTTATTCTTGTGAGTTGTGTTCCGCCAAATTTAGGAATTCGTACAGTCTGACACGGCATATGAGGTGgcatattaaaaaggaaatctAA
- Protein Sequence
- MAIEYDELHEHYDNNCEEYNSAAHIKLEDCIVQTGDFLDSKAGISLISDDILAQEVSLVNIKDENFDEQLSKDIISTEDCEKFNSDVDIKLEDSIVETGDYLDSKVGISLISDHSVAQGENSNDYYNKSFKHKQLFHHVRSMHLLGKIHMCSYCGRTFRRKTDLTKHVRTHTGEKPFTCEICKKSFSEKSNLTAHIRRHTDEKPFTCEICKKSFCDKNRLKKHITIHTGEKPFTCEICKNSFCEKGGLTKHVRNHNNVKPFTCEICKKSFCEKGRLKKHITTHTGEKPFTCEICKKSFSEKDGLKKHITRHAREKPFSCEACKKSFREKYVLMRHIRTHSGEKPFTCEVCKKSFARKNGLTIHMIKHTREQPFTCEICKRSFCEKGRLRRHIRTHTGEKPFTCEICKKSFCGKDGLKNHIRTHTGKKMFTCEVCKKSFTGKSGLTIHMIKHTGEKPFTCEICKKSFFRKSGLKTHTKYHTGEKRFTCEVCKMQFFCSAYLQRHMAVHMGDCPYSCELCSAKFRNSYSLTRHMRWHIKKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627450;
- 90% Identity
- iTF_00627450;
- 80% Identity
- iTF_00627450;