Basic Information

Gene Symbol
Zfa
Assembly
GCA_947523025.1
Location
OX383292.1:18746545-18755224[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.009 0.82 10.9 1.6 3 23 646 667 645 667 0.96
2 23 0.2 18 6.7 0.3 1 22 1051 1072 1051 1072 0.95
3 23 7 6.4e+02 1.8 0.4 1 22 1114 1135 1114 1137 0.82
4 23 0.015 1.4 10.1 4.8 2 22 1147 1167 1146 1167 0.93
5 23 2 1.9e+02 3.5 0.0 3 23 1176 1197 1174 1197 0.89
6 23 0.017 1.5 10.0 0.2 3 23 1218 1239 1216 1239 0.96
7 23 0.0017 0.16 13.1 1.7 1 23 1245 1268 1245 1268 0.95
8 23 0.12 11 7.4 0.0 1 23 1294 1317 1294 1317 0.90
9 23 0.018 1.6 10.0 3.4 1 23 1322 1344 1322 1344 0.97
10 23 0.0081 0.74 11.0 0.2 1 23 1350 1373 1350 1373 0.95
11 23 0.0038 0.35 12.1 0.8 1 23 1386 1408 1386 1408 0.97
12 23 0.00017 0.015 16.3 1.8 1 23 1458 1481 1458 1481 0.97
13 23 0.0025 0.23 12.6 0.9 1 23 1542 1565 1542 1565 0.95
14 23 0.0022 0.2 12.8 2.1 2 23 1592 1614 1591 1614 0.95
15 23 0.037 3.4 8.9 0.1 2 23 1620 1642 1619 1642 0.94
16 23 0.0093 0.85 10.8 0.2 1 21 1686 1706 1686 1707 0.95
17 23 0.00039 0.036 15.1 1.0 1 23 1717 1739 1717 1739 0.93
18 23 0.00011 0.0096 17.0 0.3 2 23 1832 1854 1832 1854 0.93
19 23 3.7e-07 3.4e-05 24.7 1.4 3 23 1861 1881 1860 1881 0.98
20 23 0.021 1.9 9.7 0.3 1 23 1899 1921 1899 1922 0.95
21 23 0.17 16 6.8 0.0 1 23 1945 1967 1945 1967 0.97
22 23 0.026 2.4 9.4 0.6 1 23 1973 1996 1973 1996 0.95
23 23 0.00024 0.022 15.8 0.4 1 23 2004 2027 2004 2027 0.96

Sequence Information

Coding Sequence
ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCCACTAATGTCTGCAGGAAATGCATGGATAATGTCAATAACTGGCATGTTTTTAAAAATGTCTGTGAAAGGACACAAAACAAACTACAGTCTCTAAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAAAGTGAACCACTGTCTGATGGGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGGCATTGAGAATGCTGGCTTTTCAAACAAAGTGCAACCTGAAGGTCCCCCAATCTTGGCTTCACTGGGGCTCACACCAAGAAGTGATAAGAAATGTGTGGACCCGCGAATGGATTGGCATCGGGTCCATGCAATTTTGGACATGGTTCAAGACAATGAGGTGATTGACTCTCTGCAGACAAACGAAGAGTGTGATGTTTTGCAACATTCTGATCATGACTCAGACACAGAAGCCGAACTCCAACCAGAAATTGATGATGATTATGTTGATTGCAAAAGCGGTTACATATGCAAAAATAAAAAAGTTATATCAAAAGTTCCAAAACTATCAACTTCTGTAAATAATGCCAGAGTAAAAGAAGCTTTCAAACTCAGAAAACGTAAATCAGAAGTTCGTAAACATTGTTCAAGGCCTAAAAATGCGTGGCAGTTGTTATTCACCGATGACCTACTAGAATTGATTGTTGCTTCCACTAATGACAATATTGTGACAAATGGGAAAAGTTCCACGGAGTCGACTAGTGTCAGCGAAATTAAAATGCTTATAGGTATTCTGTATCTGCACGGCATAATGCGGCCGACGCATCAGAAATGCAGTGACCTTTGGAACAGTGAATGTGGTGTTCCTTGCGTCAGAAATGTCATGAAATACGAAAGGTTCAAATTCCTGCTTCAAAACATGAGCTTCGATAAAGAGGACGACGATAGCATTATACAGTTCGACATAATGAAGCGTATGCGTAAAGTATTCGAAATATTCGCCATGAATTGCAGAACATCTCACGAGATCGAGAATGCCGCGGTTATTGATGAGATCATCGTGCCAGTTTACGGACCTTGCCCATTTCGATACAATATTGATAAGAAGCCGCTGAAGCGGGGCATAAAAATGGTATTGCTAGCTGATTCATCTACATTCTATATGAGCAATTTAGACGTCATTACTGATCCTTATTTTGGCGCCGAGGAGATAACGAAAAAGTTGGTTCAGCATTTAGCTGGAACTGGCAGATCTATTATTATGGATAGTTGGTTTACATCTTCCTCATTGATGGAAAGCCTTAGAAATGAGTACCAGTTGTATTCTATTGCAGCACTGAACCCAAACAGTGATATTATTCCGCCACTATTCCTATCTCAATACAGGAAATGTCGAACATTCATGTCTGGATTTATTGATCATGAAGTATCACTGACATCTTATGTCAATACTGAGGGGAAATCAGTAAATGTATTGACTAATGAGCCTAGATATTACAGGAAAGGTCATATAAACCACACTACAGTTGTATCAGTGTATAAGAAGAATCAGTCTGCCGTAGAAGTTGTGGATGTTCTCATGAATTACTACACTACAATGCAACACACAAATGATTGGACATTGTCATTATTCTTTACATTGCTGAATATCGCCTCTGGTGCGGAGAGTGAAAACAATGAAGAAGACGAGGAAGAAATGAACGAGCCCGCCCAAAACTTCCCGAAAATGCCCCACATGCCCGAGGTGTCCATCACGGTCATGAGGCCCACTGGTGAAACCCTGCACGCTCGCCAAGGTATTCACCAACTGGCCTCCAAACTGTGCCTTGTCTGCGGCCGCTCCTACAGGTACTCCCACAATGCACGCAGACATGAACTTACCTCTCACAGTTTCGACAGATATACAAACAAAATTACTCCTAAAAAAACTCTCAATCATCTACAACCCAAACTCAGACCGAACCCATTCAACCCCAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGATGCAGTTCTTGAACAAGAACATGCCAACAAAAATAATGCCCATGAACAAAGTCATAACGCCACAGAAACCCATTCCAATAAAGACGTCAAAGACACAAAATAATTTGCCTTATCCTCTACGCATTAAAGCACTCAAAGATTTACAAATTAAGAAAAAGGAGCCTCAGATTCTTAAGACTTTGTTAACCTCTAAACCTGAAGTTCTGGTTTCCGAACCAGAAATTCTAAATTCTGGGCCTGAAAGTCCAGAAACATTGATATCTGAGCCTGAAATTGCGTCTTTTCAAGTCGAAGCTATTCTTACGGAACCCGATGCCGATGCATACGATGATCCACAGCAAGGCGACGAAGAAGCTGATGAAGAAATGCAGAACAATCAAAGTCAAAACTATGACACAGTCGATATGGACTCTGATAATGAAATAGAGATTGCTCGTCAGCAAGGCATTGAACACGAAGGTGAGGAAAATGCTGATGGGGAAGAGAATATCGACCATGATGACGATAATAACATGGAAGGCGGTCAGAGCGATAACGAGAAAGACGGCAATGACGATACAGCTGAAAGTCAAGAGAACATGGAAGAAGAAGATAGTATTGATATTAAACCTGAAGATCAAATGAAGGACGAAGAGGGCCAAGAGGAGGGAGAACACGAAGAATTAGAAATTAATCACAACGAAAACGAGGAAGAAGACGATGATGACCTTCCAATATCTATAGCGCCCGTCGTCGAAATAAGTGAGGGATTGCAAGCCGACTCGTTTAACAGCGAAGTCAATGAAGAAGACGAGGAACTCGATGAAACTGCCGATACCAGTGAAGCCATCGAAGAGGAGGAGCAGGTCAAAGAACTGGACCCTGACAAAACATATGTTACGAAAACCCAAAGAGACTTCATCCATAAATATCGCGACATCATTCAGCAAATCAACACGAAGCGTTGTCTATGTTGCGACCGAGAACATCCGCGCAGAAAAGCTGTTATACAACACTTGCAGAAAAACGGACATAAGGTACCAAAACACACTTGTTACAATTGTGTCATCACGTTCGGACATATTGGCGCGTTACTCAGTCATATGAGGTCGAATTCTTGCACTAATTTGTGGAAGATTATTTACAATGAAAATGGCATTACTGAGGACTTAGTTCTCGAAGATGAGCCGAAAGAAGTCAAGGTTGCATATAAAGATATTTTCAATGCCAGGTCGTACGCTTGTAAGCTCTGTCCAGCTAAATTTCAACTGAAACAGTTTATTATGAAGCATGTTTTGGATACTCACGAGGATGGACAGTCTAGAGTACCACTCTGTTGTGTCCACTGCCGATCTAGGTTTAAAGATAAGAGCTTACTAAAGAAACACATTCGCAAAGGTGATTGTACAGTTTATATTGCTTGTGATTTGTGCTCGGAAAAGTTTGGGAATATGCAGGACTTTAACGACCATGCGCTAGCTATCCACGCTGGCAGCTTCGATCAGTCGGATAATCAGAGCAAATGTGTTGACGGTCGACCAACAGACTGTCCTTTATGCGGAAAGAAAAACAGCAGCTATCCGAATTTAGTGAAACATTTGAAAATTATACATGCGGAGGAGAAACCTCACTACTGCCAGCATTGCGACGCTAAATACGAACAAGCTGCTGATCTTAACAAACACATTTACATGGAGCATTCTGACAGAACATTAGGCATGGCGCCCGCTGAACCGGATATGTCCATAGTTAAGGAAGAAGCAGAGGAGTACCATTACTCCTGTACGGAATGTAATGCCATATTCGAAACTGTTGATGCGTGGACTGATCACCAAGTCGCCGAACATAACCAAGTGGCCCACCACTGTGACCAGTGTGAAAAGAAGTTCCTGCGTCCTTCAGAGCTGGCAGAGCACAAGAACACTCATTTGAGGGTTAAATTCTATCCTTGCAGTGTATGTCCTAACTCTTACAGCACTCCACAAAAACTGTCTGAGCATGTGCAGCAGTCACATCCAGGAATTGGCGCAGTCGCGGCAACTGAGTCGGAATTCTTCTGCGACATCTGTATCAGAGCATTCAAAAGTCGCCAAGCTTACTCAAATCATATGCGTATTCACGCTAAAGTACCTACTACTAATAGGAAACCAGTTCCGGGTAAAGAGGGATTCGCGCCTCAAATTATCGGGAAACCCATCAAACAATATCCTATGGTTCAACCTGGTTTTGTGTCATTTAAACCTAATTACAACATCCCTAACGCTCCATATTCATGTGACATTTGTGGTAAAGGATTCATGCACAAGAAGAATATATGGAAACACAAGAAAGTGTTGCATGCCGATATTTTAGTCGATAGACATGACAGTGAAGAGAACACTATGCAAGCTTCCACAGAAGAGGAGGAATTCAACCCTGATGAGAATGGTGCCGTTCTCTCGACGCCACAATTTAATAGTTTTATTAACTTTACGAACTTCCCGAACAATGCTCAACAAACGCCATCAGATACAATGCCTTATGCGTGTGATTTATGCAGCAAACGGTTCCCGCTTAGGACCAGTTTATGGAAACACAAGCGCGCTAAACACGGAATCGTAAACCCTAGCGCTAGTAGTAGCAACGATACATCCACGCCGTCCGCTAGTGGGGAAGGCAGTAGTCGATCTAGCTGCACTATATGTAGAATCACATTTTCAGATAAGAAATCTTATTATCGTCATCGAAAGAATGTCCACAAATCTACCGTACAAATGTGCAAAATATGTGGCAAACCTCTAAGTTCAACTTTGGAACTATACGAGCACTTGAAAGCCGCTCATGCAAGGGAATTACTGGGTTATAACGCTAACCAAGGCTCCAGTAAATCACAAGAAATTTCACAAGAGATTGAACCCGATTATGAAAATGATCAAGAGTCTGTTGACCCCAGCGTCGATTACCAAGCGCGCTATCCGTGCGATACTTGTGGCAAACAATTTGTTGGTTTGCTAGCGTTGCAGAACCACCAGTGCATCAATCAGACACCATCACAACCACAGACGTTTGACTGCGAGATTTGTCACAAGAGCTACACTTCAATATCTGCGCTAAAAAGCCATCGTGGGTGGCATTTACGTTCCCCCGATGGAAAAGCAGCCGCCAACAATTCTGGCCTGTGGATGCCTCAGCACAAAGTTACGAGCAAGATAAGCAAATATGAGGTCATCGACCCGTCACAACTTGCTAAGGTCACACATACCCCCACTCCCCCTCCTGTCACTGCTACCGCAGCGAAAAGAAGACTACCACCAGAGGTCGAAGTGACAGTCGTAAATCCAAACAAGAAACTGCGCTCGGACGACTCGGTCGACATGGATATGCAAAGTACTGGTGCAATCGAGGATAGGTACTGTACGATTTGTGACAAGGAATTTACAAAACGCGCGGCGTATCAACGCCACATGGACGAAGTACATCAACCGAACTCTGTATTTTGCCCGGTCTGTGATAAGAGTTTTACAAGGAAATCCACATTGCTCATCCACATGAAGAAACACTACGAGAGTGGTGAGGGCAGTTCCTCTGCTACAGGTCAAGGGGACGATGATTACTCCTGTGATTTGTGTGGCGCTCAGTATGACAATGATCAGGCGTTGAGGGCGCACCGAGCGCGGCACCATGGAGAAGATGAAGAGTCGGCAGAAGAGAGTGACGACGGAAATGTTCCTATTGCTCCTCCCGGTGAGTTTACATGTGCGCAATGCGGCGATGGCGTTGCTACACCAAGAGACCTCATCGCCCATCGCACAATGCACGCTACTCCCACCAAATTCTTCTGTAACATATGCAAAGTGTACTTCGCTCGGGCGCTCGACCTCTCCTCGCACACTCGGGCGCGACACGCAGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGACAGGTTTTACATGAACAAGAAGAGTTTACAGCGCCACATCGAGATGGCGCACTGA
Protein Sequence
MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHVFKNVCERTQNKLQSLKDGSQLEEVKIKSEPLSDGAYDDGVVIDGSYPGIENAGFSNKVQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQDNEVIDSLQTNEECDVLQHSDHDSDTEAELQPEIDDDYVDCKSGYICKNKKVISKVPKLSTSVNNARVKEAFKLRKRKSEVRKHCSRPKNAWQLLFTDDLLELIVASTNDNIVTNGKSSTESTSVSEIKMLIGILYLHGIMRPTHQKCSDLWNSECGVPCVRNVMKYERFKFLLQNMSFDKEDDDSIIQFDIMKRMRKVFEIFAMNCRTSHEIENAAVIDEIIVPVYGPCPFRYNIDKKPLKRGIKMVLLADSSTFYMSNLDVITDPYFGAEEITKKLVQHLAGTGRSIIMDSWFTSSSLMESLRNEYQLYSIAALNPNSDIIPPLFLSQYRKCRTFMSGFIDHEVSLTSYVNTEGKSVNVLTNEPRYYRKGHINHTTVVSVYKKNQSAVEVVDVLMNYYTTMQHTNDWTLSLFFTLLNIASGAESENNEEDEEEMNEPAQNFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHSFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFLNKNMPTKIMPMNKVITPQKPIPIKTSKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYDDPQQGDEEADEEMQNNQSQNYDTVDMDSDNEIEIARQQGIEHEGEENADGEENIDHDDDNNMEGGQSDNEKDGNDDTAESQENMEEEDSIDIKPEDQMKDEEGQEEGEHEELEINHNENEEEDDDDLPISIAPVVEISEGLQADSFNSEVNEEDEELDETADTSEAIEEEEQVKELDPDKTYVTKTQRDFIHKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITEDLVLEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLCCVHCRSRFKDKSLLKKHIRKGDCTVYIACDLCSEKFGNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDAKYEQAADLNKHIYMEHSDRTLGMAPAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAATESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPVPGKEGFAPQIIGKPIKQYPMVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAVLSTPQFNSFINFTNFPNNAQQTPSDTMPYACDLCSKRFPLRTSLWKHKRAKHGIVNPSASSSNDTSTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQEISQEIEPDYENDQESVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQTPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKYEVIDPSQLAKVTHTPTPPPVTATAAKRRLPPEVEVTVVNPNKKLRSDDSVDMDMQSTGAIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDYSCDLCGAQYDNDQALRAHRARHHGEDEESAEESDDGNVPIAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
iTF_00758469;
80% Identity
-