Basic Information

Insect: Drosophila yakuba
Gene Symbol: retn
Assembly: GCA_016746365.1
Location: NC:22182730-22205343[+]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.1e-25 1.1e-22 80.6 0.0 2 89 297 382 296 382 0.96

2 2 9.4 9.3e+03 -2.5 0.3 12 12 538 538 514 578 0.54

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.1e-25	1.1e-22	80.6	0.0	2	89	297	382	296	382	0.96
2	2	9.4	9.3e+03	-2.5	0.3	12	12	538	538	514	578	0.54

Sequence Information

Coding Sequence: ATGCAACTGCGAGTGCACCCTACTATGGACTGTAGCGGTCGTTCAACCAGCAACATTGAACGCGATTCCGATCTGGGCGACGATTTGtCACATGGTGATCGAACGGACGACGAGATGCGCGACTGCGACTCCGTGGATGGGGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCAGCCCGCTTGAGTCACACAGTTTCCGGCGGCGGAGGCAGCTTCGCCAGCCCCGAACCGCAGACCGAGCTGCCCCTGAGCCATCACCATCAACTGCCGCCGAATCATCCGCTCAACGCTCTGGGCAGCTTCATGGGCATCGGCGGACTACACAGCATTCCAAATCTCCAGCACAGCGACGTGCTCGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGCCTAATGGAACAGGACTACGCTGCCGCAGCACATGCCGCTGCTTTCGGGGCCAACATGCTGCCCACGACGATCAGCTCGGGCTTCCCACTGCCCCACAACTCGGTGGCCTTTGGCCATGTCAGCTCGGCGCCCAGCGGTGGCAATGGGAGCAGCTACAACGGAGGCACCACCCCCACGCCCAGCGCCAACAGCAATGCGGCCACCAATGGAGGCGCCACCACTGGACCCGGTGGAACAGGAGGATCgggcggcggaggagcaggaggcggtggcggaggaggtggaggagtgGGTGGCCACCAGTTCTCGTTCGCATCCCCCACAGCAGCGCCGAGCGGCAAAGAAGCCCGCCACTTTGCAGCCAATTCCGCATCGAACTCGTCGACGTCCAGCGAGGCTTCCAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTTCAAACAAGTCAGACAGCTCTATGAAATCAACGATGACCCCAAGCGCAAAGAGTTCCTGGACGACTTGTTCTCATTTATGCAGAAGCGCGGAACTCCGATCAATCGGCTGCCGATCATGGCCAAATCTGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATAGCCCGCGGCGGCTTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCACCTGCCCTCCAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTCAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGGAATCGCCGGGAAGGACGTCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCGATGACGCCCATTTCACGACCCTCCCTCCCCGGTGGCATGCAGCAAATGTCGCCGCTGGCACTGGTCACCCATGCCGCGGTGGCCAACAATCAGCAGGCACAGgccgccgctgcagccgcagcagctCATCATCGCCTGATGGGCGCTCCCGCCTTTGGCCAGATGCCCAACCTGGTCAAGCAGGAGATCGAGAGCCGGATGATGGAGTATCTGCAGCTGATCCAGGCCAAGAAGGAGCAGGGCATGCCGCCCGTTCTGGGCGCCAATCAtccccaccagcagcagcactcacagcaccagcagcagcagcagcaccaccagcagcagcagcagcagtcgcagcagcaacaccacctgcagcagcagcgccagcggTCGCAGAGTCCGGATCTGAGCAAGCACGACGCACTCAGTGCCCAGGTGGCCCTGTGGCACATgtaccacaacaacaacagcccgCCGGGCTCGGCACACACCTCGCCGCAGCAACGCGAAGCCCTGAACCTCTCCGACTCGCCTCCAAATCTCACAAACATCAAGCGCGAACGCGAACGGGAGCCCACTCCAGAGCCCGTGGACCAGGATGACAAATTTGTGGACCAGCCGCCTCCAGCGAAGCGCGTGGGCAGTGGCCTCCTTCCGCCCGGCTTTCCCGCCAACTTCTACCTGAATCCACACAACATGGCCGCTGTGGCAGCAGCTGCGGGATTCCATCACCCATCCATGGGCCACCAGCAGGATGCCGCATCCGAGGGCGAACCGGAGGACGACTACGCCCACGCCGAGCACAACACCACGGGCAACTCATCCTCGATGCACGACGACAGCGAACCGCAGCAGATGAACggacaccaccaccaccagacCCACCATCTGGACAAGTCCGATGACTCGGCCATTGAGAACTCACCCACCACGTCGACCACCACCGGTGGGTCGGTGGGTCATCGCCACAGCTCGCCCGTTTCCACCAAGAAGAAGGGCGGCGCTAAGCCCCAGAGTGGAGGAAAGGATCTGCCGTCCGAGGACAAGGATGCCTCGTCCAGTGGCAAGCTCAATCCCCTCGAGACGCTTAGCCTGCTGTCCGGCATGCAGTTTCAAGTGGCACGGAATGGAACGGGCGATAACGGGGAACCGCAGCTGATTGTCAATCTGGAGCTTAATGGCGTCAAGTACTCTGGGGTGCTGGTGGCCAATGTGCCGCTGTCCCAAAGCGAGACAAGGACGAGCTCACCCTGCCACGCTGAAGCACCAACAGCCGAGGAGGAgaaggatgaggaggaggagccgaAAGCCGCTGAAGAGGAATCGCATCGATCGCCAGTCAAACAGGAGAGCGAGGAAGCCGACCAGGACATGGAGGGCAGTGAAATCCTCCTGAACGGTGGTGCTTCgtcggtgggtggtgctgttgcagttgctggtgtgggtgtgggtgtgccCCTGCTCAAGGATGCCGTGGTCAGCTAG
Protein Sequence: MQLRVHPTMDCSGRSTSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVSGGGGSFASPEPQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSGFPLPHNSVAFGHVSSAPSGGNGSSYNGGTTPTPSANSNAATNGGATTGPGGTGGSGGGGAGGGGGGGGGVGGHQFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGANHPHQQQHSQHQQQQQHHQQQQQQSQQQHHLQQQRQRSQSPDLSKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVDQDDKFVDQPPPAKRVGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHPSMGHQQDAASEGEPEDDYAHAEHNTTGNSSSMHDDSEPQQMNGHHHHQTHHLDKSDDSAIENSPTTSTTTGGSVGHRHSSPVSTKKKGGAKPQSGGKDLPSEDKDASSSGKLNPLETLSLLSGMQFQVARNGTGDNGEPQLIVNLELNGVKYSGVLVANVPLSQSETRTSSPCHAEAPTAEEEKDEEEEPKAAEEESHRSPVKQESEEADQDMEGSEILLNGGASSVGGAVAVAGVGVGVPLLKDAVVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527091;
90% Identity: iTF_00505186;
80% Identity: -