Dvul012586.1
Basic Information
- Insect
- Drosophila vulcana
- Gene Symbol
- bab1
- Assembly
- GCA_008042555.1
- Location
- VNJP01011007.1:22607-24251[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.6e-18 2e-14 53.6 0.0 1 43 55 98 55 100 0.95 2 3 2.1 6.4e+03 -2.4 0.2 6 12 209 215 201 218 0.69 3 3 4 1.2e+04 -3.3 0.1 4 11 224 231 224 231 0.84
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCATGCCTGGATGGGAGCCACCGGATCCACGCTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAAAAGTGCTGGAACACCAACCAGAACCTGATGCATCACATGCGCTTCCGCGAACGGGGACCGTTGAAGTCCTGGCGCCCCGAGACCATGGCGGAGGCCATCTTCAGTGTGCTGAAGGAGGGCTTGTCCCTGTCGCAGGCTGCCCGCAAGTACGACATCCCGTATCCCACCTTCGTGCTGTATGCCAATCGAGTGCACAATATGCTGGGACCCTCCATTGACGGTGGGCCGGATCTGCGGCCCAAGGGTCGTGGGAGACCGCAGAGGATCCTGCTGGGCATCTGGCCCGATGAGCACATCAAGGGCGTTATTAAGACGGTGGTTTTTCGCGATGCCAAGGACATAAAAGACGATAGTTTGGGGGCTCACATGCCGCCCTACGGTCGCCACTCGCCCGCGTTTCCCTTGCAGGACCTCCCATTGAGCTATCCGGGCGCTAGTGGCGCCCTCGCCGGGACTCCGAGCTCGCTGGCCTGTCCTAATGGCAGCGGTCCCCAGTCGGGCGTCGGCGGGGAACAGCACATGTCGCAGGAAACGGCCGCAGCGGTGGCCGCCGTGGCCCACAACATCCGgcagcagatgcagatggCAGCGGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGCCCGTTCCGCCGGGTTTGTTCAACCTGCCGCCCCATCCAGGCGTGGGCGTTGGCGTTGGTTCGGTTTCGTCCGGTTTCGGTGCCAGTTCCAGTTCCtccgcttcctcctcctctctggTGGGTCAGCATCCGGCCAAGGCCAAGGGCAGTCCGCTGCGCAGTGAAACGCCGCGGCTGCACTCGCCGCTCGGCGATCTCGGCCTGGACATGGCCTACAAAAGGGACTTCTCGCCCAGTCGCCTCTTCGCCGAGGATCTGGCCGAACTGGTTGGTGCCAGTGTctcatcctcctcatcctcggcGGCAGCGGGTGCCGGGATTGTGGCTGCCCAGCAGGAGAGATCGGGCGGAGGATCGTCGGCGGCAGCGGGAGCAGAAGCGCCCAGCTCCTCGAGCAGCGGTGGTGCCGGAGGCATCAAGGTAGAGCCCATTACCACCACTAGCGAGTAA
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDIKDDSLGAHMPPYGRHSPAFPLQDLPLSYPGASGALAGTPSSLACPNGSGPQSGVGGEQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPVPPGLFNLPPHPGVGVGVGSVSSGFGASSSSSASSSSLVGQHPAKAKGSPLRSETPRLHSPLGDLGLDMAYKRDFSPSRLFAEDLAELVGASVSSSSSSAAAGAGIVAAQQERSGGGSSAAAGAEAPSSSSSGGAGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00492155;
- 90% Identity
- iTF_00540997; iTF_00488589; iTF_00565298; iTF_00590166; iTF_00492155; iTF_00486493; iTF_00531582;
- 80% Identity
- -