Dbia000825.1
Basic Information
- Insect
- Drosophila biarmipes
- Gene Symbol
- bab1
- Assembly
- GCA_018148935.1
- Location
- JAECYG010000079.1:23460258-23463158[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.6e-18 1.1e-14 53.6 0.0 1 43 55 98 55 100 0.95 2 3 1.2 2.3e+03 -1.8 0.2 17 23 207 213 201 221 0.57 3 3 3.4 6.5e+03 -3.3 0.1 4 11 227 234 227 234 0.84
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCACGCCTGGATGGGGGCCACCGGATCCACGCTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAACCAGAACCTGATGCACCACATGCGCTTCCGCGAGCGGGGTCCGCTGAAGTCCTGGCGACCCGAGACCATGGCCGAGGCCATCTTCAGCGTCCTGAAGGAGGGACTCTCGCTGTCGCAGGCCGCCCGCAAGTACGACATCCCGTACCCCACGTTCGTGCTCTATGCCAACCGGGTGCACAACATGCTGGGACCCTCCATCGACGGCGGGCCGGACCTGCGGCCCAAGGGGCGCGGCAGACCGCAAAGGATCCTCCTGGGCATCTGGCCCGACGAGCACATCAAGGGCGTCATCAAGACGGTGGTTTTCCGCGACACCAAGGACATCAAGGACGACAGCCTGGCGGCCCACATGCCGCCCTACGGACGTCATTCGCCCGCGTTTCCCTTGCAGGACCTTCCCCTGAGCTACCCCGGCGCAAGTGGCGCCCTGGCAGGAGCACCCAGCTCCCTGGCCTGTCCAAATGGAAGCGGTCCGCAGGCCGGCGTGGGCGGAGTGGCTGGTGAGCAGCACATGTCGCAGGAAACTGCCGCTGCGGTGGCCGCAGTGGCCCACAACATCCGACAGCAGATGCAAATGGCAGCGGCCGTGCAGCATCAGCACGGGGAGGCGGGACCACCGCCCGTTCCGCCCGGTTTGTTCAACCTGCCGCCCCACCCCGGATCCGGTTTCGGTGCCAGCTCCAGTTCCTCGGCCTCCTCCTCCTCGCTGGGCCAGCTGCATCCCAATCCCAAGGCCAAGGGCAGTCCCCTGCGCAGCGAGACTCCGCGGCTCCACTCCCCGCTCGGCGATCTGGGCCTGGACATGGCCGGCTACAAGCGGGAGTTCTCGCCCACCCGACTCTTCGCCGAGGACCTGGCCGAGCTGGTGGGCGCCAGTGTCTCCTCGTCCTCCTCCTCAGCGGCAGCGGGCGCAGCGCCCGCGGAGCGATCGGCCGGAGGATCTTCGGCCGCCGCGGCAACTGATGCGGCCACTTCCTCGAGCAGTGGAGGCATCAAAGTGGAGCCCATCACCACCACCAGCGAGTAA
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDDSLAAHMPPYGRHSPAFPLQDLPLSYPGASGALAGAPSSLACPNGSGPQAGVGGVAGEQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPVPPGLFNLPPHPGSGFGASSSSSASSSSLGQLHPNPKAKGSPLRSETPRLHSPLGDLGLDMAGYKREFSPTRLFAEDLAELVGASVSSSSSSAAAGAAPAERSAGGSSAAAATDAATSSSSGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00492155;
- 90% Identity
- iTF_00617561;
- 80% Identity
- -