Dvar014993.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila varians
Gene Symbol
nfxl1
Assembly
GCA_018150405.1
Location
JAECWK010000135.1:21258117-21261215[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 1.5e+04 -8.1 6.4 15 19 145 149 144 149 0.82
2 21 0.13 9.7e+02 -0.3 0.4 4 10 180 186 179 186 0.95
3 21 6.5e-08 0.00049 19.8 15.5 1 18 194 210 194 211 0.98
4 21 0.21 1.6e+03 -1.0 1.7 5 10 236 241 236 241 0.91
5 21 2.3e-07 0.0017 18.1 17.5 1 18 247 265 247 266 0.97
6 21 0.28 2.1e+03 -1.4 1.3 5 10 290 295 290 295 0.94
7 21 9.1e-07 0.0069 16.2 13.5 1 19 301 321 301 328 0.95
8 21 0.88 6.7e+03 -3.0 0.5 1 7 345 350 344 352 0.49
9 21 2.6e-08 0.0002 21.1 15.0 1 19 355 373 355 373 0.99
10 21 0.7 5.3e+03 -2.6 0.4 1 5 382 386 382 391 0.73
11 21 2 1.5e+04 -5.0 2.3 5 10 396 401 396 401 0.91
12 21 0.00031 2.3 8.1 17.8 1 18 407 424 407 425 0.97
13 21 3.3e-08 0.00025 20.7 14.7 1 19 434 452 428 452 0.90
14 21 0.00015 1.2 9.0 8.6 9 18 497 506 495 507 0.91
15 21 0.015 1.2e+02 2.7 7.1 1 12 519 529 519 529 0.96
16 21 0.86 6.5e+03 -2.9 1.4 6 10 583 587 582 587 0.88
17 21 3.4e-06 0.026 14.3 5.1 1 12 593 604 593 604 0.97
18 21 2 1.5e+04 -4.4 1.5 15 18 617 620 617 621 0.85
19 21 0.035 2.7e+02 1.5 17.1 3 18 633 648 632 649 0.91
20 21 2 1.5e+04 -6.1 4.1 4 11 654 657 653 659 0.55
21 21 0.00011 0.83 9.5 14.0 3 17 701 718 690 720 0.84

Sequence Information

Coding Sequence
ATGGAAAAGTTCAATAAAGCGCAGGCCAAAAATTTGGCAGCAGCCCAGAAACTCGTAGAAACCTATGCCTCCAGCTCCGAAGATGAAGGCGAACTGGACGAGAAGCAAATTTTGGAACAACTTTACAAGCACTACCAGCCGTCCGACGGAGGCTCAAAAGATGCCACCCGCACCGCCACGTTCCTGGAGAACACCCTTCACTCCGGAGCAGCCACCTGCCTCATCTGCATAGGAAGCATCCGGCGGGTAGAGGCGATATGGTCTTGCGAGAGCTGCTACTGCTTCTTCCATTTAAACTGCATCCAGCGCTGGGCCAACGACAGCATGATGCAAATGAAGGTGAAGGCAGCGGAGCAGCAAAATGGACAGGGCCACTACAATCACCTGGGTGAGTTTGTTCCTCCAAAGCGCCAGAAGTCCCTGCACTGGTGCTGTCCTCAGTGTAGAAGGGACTACCAGCCAACGGACAAGCCCACGCAATACAACTGCTTTTGTGGCAAGGAAGCAAATCCTCAGTCCCAGCCTTTCCTGGTTCCCCACTCGTGCGGCGAGATATGCAGTAAGCTGCTGCAGCCCAAGTGTGGACATGATTGCAAATTATTATGTCATCCCGGGCCATGTCCGCCTTGTGCCCAGCAGGCAAAGGTCTCTTGTCTGTGTGGGAAGTCCAGTCCACGTTCCATGAGGTGTATTGACAAGCAATGGAGATGCCAACAGCCGTGCAATGAGCTACTGGCCTGTGGCAAGCACAAGTGCAAACAGGAGTGTCATCGACCGGGACAGTGTCCTCCATGCAATAGCAAGAGCCTGCAGCCTTGCGAATGCCAGAGAGAGTCCAAGATGGTCAACTGCTCCGATCGCAAATGGAAGTGCCAGAATGTTTGTGGAACTCCCTTTGCCTGTGGTCTGCACATTTGTGAGACGGTGTGTCACGCCGGACCCTGTCAGGGTGGAGAATGTCCATTCCAAGCCAGAAGTTGTCCTTGTGGGAAGAATAATCAAGTAGGTCCATGCAATGAGGCAGAGGAAACTTGCGGAGACACTTGCCAGAAGCTGCTGTCCTGTGGCAAGCACACATGCACCCAAAGATGCCATCGGGGTCCCTGCATTTCCTGTCCTGTGAGAACCAAAAAGAAATGTCGCTGTGGTTTGCACGAAAAGGAGCTGCCCTGCTCCAAAGAATTTACGTGCGAGACAAAGTGCAAGCAAATGCGGGATTGTGGAAAACACTCTTGCAACCGAAAGTGTTGCGGCGATCAGTGCCCACCGTGTGAGAAGATTTGTGGCAAGCAACTAAGCTGCAATAAACACAAATGCCAATCCGTTTGCCACAACGGACCGTGCTATCCCTGTAAACTGGAGTCTCAGATTAATTGTCGCTGCGGGAAAACCAAACGGTGTGTTCCTTGCGGAAGAGAACGAAGTGCAAGAATAGTCTGCCTAGAGCTCTGTCGTATCTCTGCCAAATGTCATCACGCCATCAAGCATCGCTGTCACAAGGGCGAGTGTCCTCCCTGCGGGCAAGTATGCGGCCTTCCTAATGACACTAGTGGTTGCGGACATATTTGCAAGTCCCGGTGCCACGAGGCGATTCGAATAAACAAGCCCGCTGATGCGAGACCACAAGCTAAAAAGTACGAGTATAAATCAGTGCCCCATCCCCGCTGCGAAGAAGGCGTAGTAGTGACCTGCATTGGCGGCCATGAGGTGGCCACCTGGCCCTGCTGGAACTCCAAACCAAGTTCCTGTCAACGAAAATGTGGGCGGCAGCTCAAGTGCGGAAACCACAAGTGCGCTTTGGTCTGTCATTCCGTGACCAACCCGCAGGATATGCAGCAGCAGGTGGGCTGCGCGCCTTGCGAAGAAGGATGTGCTGTTCCCCGTCCTGCAGGATGCACACACTCTTGCCCCAAGGGCTGCCATCCGCCACCCTGCATGCCCTGCAACTTTGTGATGAAGCATAAATGCCACTGCGGACTTAATCAGTTGGTCTACAAGTGCAGCGAGTACTATGATGAGAAAGGCACCGTTCAGGAGATTATCGATCGGAGGGAGAAATTGCGCAGCTGTGGTAATCGCTGCTTAAAGAATTATCCCTGCACACATCGTTGTACAGCCATTTGTCATTCTGGAAAATGTCCTAACCCGGAACAGTGCCGAAAAAAGGTGCGAATTTTCTGTGATTGCAAAAGGCTGAAACAGGAGATCGCTTGTGACAAACACCGAGCAGGGCAGACTTCCCTTGATTGCGATTTAAACTGTAAAGCAGAGATCACTCGAGCCCAGGTGGCGGAGCAGCAGGATCTGGAGCAGAAGAGACGCCGCGAGGAAGAGCGTAACCGCCTAGAGTTGGAGAAGTTCGAAGCCAAGTTTGGTAAACGAAAGCACAAGGAACGCAAGACTGTGGATATGGGTCCTCCAAAATCACAAATAAATTGGCAGAAAATTGGAATTTATGCTGTGTCGCTGCTAACCGTTTTGGGAGCCATAGCAGTGGCCTTTTATGCGGAAAGCTAA
Protein Sequence
MEKFNKAQAKNLAAAQKLVETYASSSEDEGELDEKQILEQLYKHYQPSDGGSKDATRTATFLENTLHSGAATCLICIGSIRRVEAIWSCESCYCFFHLNCIQRWANDSMMQMKVKAAEQQNGQGHYNHLGEFVPPKRQKSLHWCCPQCRRDYQPTDKPTQYNCFCGKEANPQSQPFLVPHSCGEICSKLLQPKCGHDCKLLCHPGPCPPCAQQAKVSCLCGKSSPRSMRCIDKQWRCQQPCNELLACGKHKCKQECHRPGQCPPCNSKSLQPCECQRESKMVNCSDRKWKCQNVCGTPFACGLHICETVCHAGPCQGGECPFQARSCPCGKNNQVGPCNEAEETCGDTCQKLLSCGKHTCTQRCHRGPCISCPVRTKKKCRCGLHEKELPCSKEFTCETKCKQMRDCGKHSCNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQINCRCGKTKRCVPCGRERSARIVCLELCRISAKCHHAIKHRCHKGECPPCGQVCGLPNDTSGCGHICKSRCHEAIRINKPADARPQAKKYEYKSVPHPRCEEGVVVTCIGGHEVATWPCWNSKPSSCQRKCGRQLKCGNHKCALVCHSVTNPQDMQQQVGCAPCEEGCAVPRPAGCTHSCPKGCHPPPCMPCNFVMKHKCHCGLNQLVYKCSEYYDEKGTVQEIIDRREKLRSCGNRCLKNYPCTHRCTAICHSGKCPNPEQCRKKVRIFCDCKRLKQEIACDKHRAGQTSLDCDLNCKAEITRAQVAEQQDLEQKRRREEERNRLELEKFEAKFGKRKHKERKTVDMGPPKSQINWQKIGIYAVSLLTVLGAIAVAFYAES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00603756;
90% Identity
iTF_00594930;
80% Identity
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