Dval013641.1
Basic Information
- Insect
- Drosophila vallismaia
- Gene Symbol
- -
- Assembly
- GCA_035047325.1
- Location
- JAWNPU010000073.1:14465834-14471648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.007 0.6 10.8 0.1 1 23 1312 1335 1312 1335 0.95 2 13 6.9 6e+02 1.4 0.2 1 23 1488 1510 1488 1510 0.91 3 13 0.00015 0.013 16.0 2.7 2 23 1513 1534 1513 1534 0.97 4 13 5.9e-05 0.0052 17.3 0.2 3 23 1542 1562 1540 1562 0.98 5 13 4.9e-07 4.3e-05 23.9 4.1 2 23 1569 1590 1568 1590 0.97 6 13 4.7 4.1e+02 1.9 0.4 5 23 1603 1621 1601 1621 0.96 7 13 1.2 1e+02 3.8 5.4 3 23 1628 1649 1626 1649 0.93 8 13 0.03 2.6 8.9 0.2 2 23 1660 1680 1659 1680 0.96 9 13 1.5e-05 0.0013 19.2 0.6 1 19 1686 1704 1686 1708 0.95 10 13 3e-05 0.0026 18.3 0.4 1 23 1716 1738 1716 1738 0.98 11 13 8.9e-05 0.0077 16.8 7.6 1 23 1744 1766 1744 1767 0.96 12 13 0.0004 0.035 14.7 6.6 1 23 1772 1794 1772 1794 0.98 13 13 0.0023 0.2 12.4 6.1 1 23 1800 1822 1800 1823 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAACAGCGTTCAGTGCCCCGTGTGCACCTTGTACCTGCATGCGGGCATGAATCTCTCCGATCACCTGGAGACCCATCCCAAGGAGCAGGTGATCAAGGCACTGGTGCAAATGACGATCGTAGGTgctgggagtgggagtgggagcgGCGGTAGTGCTCTGGCTGCCGCAATGCTGGCAGGAGCAGGAtcaggctcaggctcaggATCAAGTGGCAGTGCAGCGAATACTGCTGAGAGTATTGCAATCGACGACAAAACAGCCATAACACCTTTGAATGTCGAAGTCAAACCAGTTGTGGCACCCAAATCCATATCAGCTGGTGCCTCTGCGGTACATACATCGCCGCAATCGCAGTTTCAGTcgcagccacagccacagccgcaagcgccgccgccgccgctttCCTCAACTCTACCAGCACCCGCCAGCACCACCTCTACCTCCGCcatcgccaccgccaccgcaaCCGCTGCAAACAGCTCCAAATCCCCAAATAGCAACAAACTGAGCAATCCACCGATAAAAGCAATGAAATGCTCACCGCCCCCGACTGAAGCGCGAGCCAGCACATCCGCACATCCCACCACAAGCATGTCCAGTAGTCTCTACCAACCAACTCTGGTTGCCCCAGATTACCGCTTtaatcaacagcagcagcagcagcaaccgaTGTTCGGGCGTGGCAGCAACGCTCCGACAGCCACACTGGTGATTCCTCAAGTGTCCCAGCAACACTTCCTCACCACCAACCCCCAGCAACAGGCACACTTTTcccatcagcagcagcagcagcaacaacatcaacagcagccTGCCCTTAAATATACCTACGCCACGGCTttgccgccgccaccgccgctaCAGCTATTCACGCAACAGCAGCCAATGCAGCAGCCGGCAGCTACATCGCAAACCAATTCGCCGCCGCACGCCAAACCTCCGCCCGCCTATGGAGCCGCTATCAGTCAAATAAGATCTCAGCACAACCAAAacaagcagcagccacagcaacagcaacagttgcaGCCGCAACAACCACACCTAACCGTGCACCACAATCACAATCACAATCACAACTTAACCCTGACACCACCGACAGCTGTCAAGCAGCTCGTTTCTGGCAAAGCTCATTCGGAATCCCCAATTTTCTTGAATCCCCCACCACCTCCATCGCAAACACAGGGCCAGCAGAATCTTGGGCATCAGCAGAATCAAAATTTGAGCACACATGCCAGCCCCCAGCTGCTGGGGACAGCGTCCTCCAATAgattgcagcagcagcagcagcatcagccgCTGGGGATGCCGATTTACGTTTCCGGATCAGGAGCCAGCAGCACCCACTCACTTCCGATAAATGCATCCAGCGCCAGCACGTGCGCCAGCATTCGTGGCCATCGTCAGACCAACTCACCCTTTGGAGCACTTCTCAATGCGGCGGCGGCTGTGGCGTGTCCTTCGCCTGCCTCCTCGAGCGCATCTTCGTCGGTGCTGCGCTACGCGGAGTCGCCGGTGGCCCATTACCTGGAGCGCGAAAACGGGGACTTTATTGTCCAGGAGACACCGAAGCACATTGTCGAGTGCGTCGAAAAGGAAGATGGCGAGTTCTCTGTGATTGAGCGTATATACCAGTCGCCGCCGAGTGTCCTACATATCCACGatgacgacgaggacgaggacgatgacgatgaggGAGACATGGAAGAGAACAGCCACGAAACCCCCCTGGAAGACGACGATGGCGATGATGAGCGCGAGGAGAACAGTCGGAGTCGCAGCAAGGCAACGAAAAAGTCACGCAAAACCAAGTCAAAGAGGAACAAGCGTCTCTCCGACGACGATGAGTTCATCATCAGCAGTGGCTGCGAAAGTGAGCCAGAACGGGAGCGCAAAAAGGATCATCATAAGGATCATCCAGCAACAGTTCCTCTTCCGCCTCTAAGCACAGCTCCCTCAACGAGTAGGGCAGCTGCCACAGCCACATCGCTATCCAATCCGGCTGAAAATCATTCCAGCTCTGCTTCAAATTCCATATCCAGCAGCACCCCCACCAAGTCCAAGAAGAACCGAATCACAGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTACCTTGACCTGATGGGAAACATTGTGGCCTCCAGTCGTATTGGGGCAGCTCGCCCCTTTGCAGCTGTGGCTCCGATTCCATTGGTTAAGGTGGAGAAGGAAGAGCCCTTGGATGAGTACGACAATGAagcggagcagcagcagcagcagatggaGCCGAAGCCCAGCCTGGAGCATGGCACCACCAGCGTAATACGAATGGCCAGCACATCGTTGGCGGCAACAGCCGTTTCCGCCGAGGACCTCAGCCAGCCGCCGCCCATGAAAGTGGAAGTGGATCCAAATACCAAGCTTTTGCCCCAGCGCTTCTCTACTCCTGCGCAGCAGCTGCGCGGGCCCAAGAAATTAGTCATTAAACCAAAGGCGACGGCAGCAGCTACGGCTACAGCGACGAAAAAGACTGACACCCCATCttcctccagcagcagcaacagcagtaacagcagcagcaacccaACCATATCAAAGGACTTTGTGCAGGTGAAGAGTGAAAACCTAGAGGGTCCAATGGGCAGTAGCATATTGGAGAAGCACCTGACCACCACCAACAGCAGCCGCAAACATCTGCATCATTCGGCGGCAAACGACGACGATGCGAGGGTGTTGCTGGAGTTTGCCAACTCCAAGCAGCCACCTCCGTTGACGGCCGCTGGCACCACGTTTGTGGTGAATGCCAGTACGGGATTTCCTTCGGCAGGATCCGTTTTTGCCAGCACCTCCAAAGCATCGGCTATAAGTAAACCCGAAGACGAATACATCCTTCCAGACAACAACTTGGATGTGGATGAGATTGTGATATCCTCGTCATCTTCCTACGCTTCTTCTGCGGCGCAGGTGCAGGCCACGCTGCAACCGCCGGAATTCAATTTCTTGTACCACCAGCAgaacaccaccaccaccacggtCACCACCGGAGTATACTTCAACTCCTTCTCCAAGCAGCAGAATCTCCAACAGCAACACGGAGTTAGCGATGCCACCAATGCAGCCACCTTGGCCTCCTCTTCGAGTAATTCCATGGACCACGATTCCATGAACGCCACATTCCGCGTGGCCAAGACTCAATCATTGCAGTCCTGGTATCAGCAGGATCACGAACAGGATGCACACAATCAAGGTGTTGTGGGAGCCGGTTCTGGTACAGCTTCTGGCCATAATCAGGGTCATGATGTGGTCTCCCAGTCCACTAACTTCAATGCTGCCCTGGCTTCTGTCGATTGCTGTAGTGTGGCGCTTGACGGCGATGCGAAATACTTGGATCTGGACGCCTGCAAGCGAGAGCAGCTGAGCGGCAGCAACTTGCCCTCGGCCTCGGCGTCCACTTCGACCACATCGTCATCATTTGCGGGAGCAGGTACGGAGAGCAGCTTGGTGGGTGGCTTGAATATTCGCACCGATGAGAAGATGCCTGCCAAGGGTGAAATCTCAGAGCAGGAAAGCAACTGCGATGTCGAAAACTCTTGGAGCGAATCGGTATACGGAGATATATCACAGCGATACTTTAGGAATCAGTTTTCTGGAGGCTACAATTCAGATTGGCGCCAGGATTACTTTCCTACTCAGGATCTAAGCGGTCAACCACGAGAACAAAAACATTTCGACTTTAATGCGCTTGACGATGAGGCCTCATCCAGCTCTAGGAAGAGCCATCTATTGGATGATGCGCCTACGGCGGGCATCACACCTTCCAACTGCACTTCCACGTCTTCGGCTTTGCTGGCAGGTCCACCAATAGCCTCGACTTCCCGGGCAGCTGCCGAGGCAGAAGCCGCTGCCATGGCAGTCGCCCAAAGGAAGCAAAACCGTCGTAAGCTTTACAAATGCCCCAATTGCGACGCTATCTTCGAGAAGTTAAAAGACCGGAATGCACACATGATTGGAGAGCATAACTATGTCCGGCAGAACCGTCGGCTCATTTGCACCCAAGTGCCCGGTTCCGAGATGCTCCcaccacagcagcagcaaccaatGATCATACCGCCAGCCGAGGGGGTCGCCCTCCAAGAGGACTCCAAAGACGGAATTGTTAAGATCAAGCAAGAACAATGCCAGGACAAGACGGAGGTAGATCAAATGCACTCCAATTCCGAGCTATTGACAGATGTCAAGGACTCGGAACTGCTCGGAATCGGGGATGCCGATGGTGACGAAGAGGGTGAAGCCGATTTTAAACCACCTAGTCAACTGGATGAGAAGATCGTATTACCACCATTGGCCATGACGACTCCAGCTGCTAAGCTGGCAGCGCTTTATCGCATGCTTATCGCCTACAATGAGTCCAAGCTGGGCCAAGAGCGAAACAACCTAAGCGAGCTGGAACAGAAGGCCATGGAAAAGTCAATCTTTCTCTGCTATGTCTGCCGAACCGACTTCCCATCGGTGAAGCTGTACGATGCTCATCTTACCGAGCATCCGGCCGAATGCTTTACCTGCGGCAAGAAGTTCTATCGCTGGAAGAACTTTTCCCTCCACCTGAAACGTCATCTCGGTTGGAAGGAATTCGGCTGCTATGTTTGCGATAAGAAATTCGTGGTACGCAGCGCCCTGGTCGAGCACATGCGGATGCATACGGGCCAAACGCCACTCAAGTGTAAGATATGCGGCAAGAAGTTTAAACGCTACTCGAATCTAACACAGCACCGAAAAAGGCACACCAAGATGATACTGCGCAAGAAGGAGTATGTGTGCCACTGCGGCGAAGTGCTGCCCTCAAAGGCACGATTCCTGTGGCACAAGGAGACCCACGATCTAAAGCCAAAGTGCTGTCCATATTGCTGCGATCGATTTGTGCATGCAAATTCGCTGCGACGCCACATCCGGCTGGCACACTCGGAGAAATTCGATTATTCCGAGCCCATAGAGTGCCCAATGTGCAAGCAGACCTTTGCCAAAACCTCGATTAAAGCCCACATGGCGACGCATTCGACGGATCCGCAGTACGACTGCACTATCTGCAACAAGAGCTTCTCCACTAAGTGGAACCTCAAGATCCACTCGTGGGTGCATGCCAATCGCACGGCCAAACCTTTCAAGTGCGAGTACTGCCCGAAGGCGTTTGTGCGCGAGCTGGACTTCAAGAACCACATCAACGCACACAAGCAGATCAAACCGTATACGTGCGAGTACTGCGGCTGTAAGTTCATCCGCAAGTACAACTACATGCGACATCGTCGCGAGCACCACGGTACGAAGAAGTTTACATGCGATCAGTGCGACAAAACCTTCCACCGGCACTACTATCTCGTTGAGCACCGGCGCATGCATACCGGCGAGCGACCCTTCACCTGCACCATATGTGGCAAGAGCTCCACCACCAAGACCAACCACAACAAGCATCTGAAGATCCACCACTCGCGCGATCCGTTTACTGTCGAGGTTTAA
- Protein Sequence
- MVDNSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGAGSGSGSGGSALAAAMLAGAGSGSGSGSSGSAANTAESIAIDDKTAITPLNVEVKPVVAPKSISAGASAVHTSPQSQFQSQPQPQPQAPPPPLSSTLPAPASTTSTSAIATATATAANSSKSPNSNKLSNPPIKAMKCSPPPTEARASTSAHPTTSMSSSLYQPTLVAPDYRFNQQQQQQQPMFGRGSNAPTATLVIPQVSQQHFLTTNPQQQAHFSHQQQQQQQHQQQPALKYTYATALPPPPPLQLFTQQQPMQQPAATSQTNSPPHAKPPPAYGAAISQIRSQHNQNKQQPQQQQQLQPQQPHLTVHHNHNHNHNLTLTPPTAVKQLVSGKAHSESPIFLNPPPPPSQTQGQQNLGHQQNQNLSTHASPQLLGTASSNRLQQQQQHQPLGMPIYVSGSGASSTHSLPINASSASTCASIRGHRQTNSPFGALLNAAAAVACPSPASSSASSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDEDDDDEGDMEENSHETPLEDDDGDDEREENSRSRSKATKKSRKTKSKRNKRLSDDDEFIISSGCESEPERERKKDHHKDHPATVPLPPLSTAPSTSRAAATATSLSNPAENHSSSASNSISSSTPTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDEYDNEAEQQQQQMEPKPSLEHGTTSVIRMASTSLAATAVSAEDLSQPPPMKVEVDPNTKLLPQRFSTPAQQLRGPKKLVIKPKATAAATATATKKTDTPSSSSSSNSSNSSSNPTISKDFVQVKSENLEGPMGSSILEKHLTTTNSSRKHLHHSAANDDDARVLLEFANSKQPPPLTAAGTTFVVNASTGFPSAGSVFASTSKASAISKPEDEYILPDNNLDVDEIVISSSSSYASSAAQVQATLQPPEFNFLYHQQNTTTTTVTTGVYFNSFSKQQNLQQQHGVSDATNAATLASSSSNSMDHDSMNATFRVAKTQSLQSWYQQDHEQDAHNQGVVGAGSGTASGHNQGHDVVSQSTNFNAALASVDCCSVALDGDAKYLDLDACKREQLSGSNLPSASASTSTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDVENSWSESVYGDISQRYFRNQFSGGYNSDWRQDYFPTQDLSGQPREQKHFDFNALDDEASSSSRKSHLLDDAPTAGITPSNCTSTSSALLAGPPIASTSRAAAEAEAAAMAVAQRKQNRRKLYKCPNCDAIFEKLKDRNAHMIGEHNYVRQNRRLICTQVPGSEMLPPQQQQPMIIPPAEGVALQEDSKDGIVKIKQEQCQDKTEVDQMHSNSELLTDVKDSELLGIGDADGDEEGEADFKPPSQLDEKIVLPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMILRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSEKFDYSEPIECPMCKQTFAKTSIKAHMATHSTDPQYDCTICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKTFHRHYYLVEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580145;
- 90% Identity
- iTF_00504154; iTF_00546134;
- 80% Identity
- -