Dust015986.1
Basic Information
- Insect
- Drosophila ustulata
- Gene Symbol
- -
- Assembly
- GCA_035047365.1
- Location
- JAWNPT010000118.1:6868742-6878935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3 1.6e+02 3.1 2.3 3 23 304 326 302 326 0.92 2 11 6.4 4.3e+02 1.7 0.4 3 20 469 486 468 491 0.92 3 11 0.0069 0.47 11.0 0.2 2 23 513 535 512 535 0.94 4 11 0.025 1.7 9.3 0.9 1 23 554 577 554 577 0.95 5 11 0.34 23 5.7 0.3 1 22 582 603 582 606 0.90 6 11 0.26 17 6.1 0.5 3 23 654 675 654 675 0.95 7 11 0.28 19 6.0 0.2 1 21 680 700 680 701 0.92 8 11 0.024 1.6 9.3 1.4 1 23 718 740 718 740 0.94 9 11 9e-05 0.0061 17.0 1.4 2 23 755 775 754 775 0.96 10 11 2.5e-05 0.0017 18.7 0.3 1 23 781 804 781 804 0.96 11 11 0.5 33 5.2 0.7 1 11 832 842 832 844 0.85
Sequence Information
- Coding Sequence
- ATGCACAACCCGACGGATGAGCTGGAGGACACGCATCTGTGCATCAGGTGCAATGCGACAATCGTGGGTCTCAGCAAGTACATAGAGCATCGCAAGAGCAATTGCCTGAGCCTGGCCAGAAATCCAACTGCCAAGCAAgtggcaacaacgacaacaacggcGCCCACAGCCGATCACAGCTACGAGGACAGCTTCCACTTCGCAGAGCCCGAGGCGCCGAGCAGCTATTTGCGCAAGACGAGCGCCAGTCATGGCGGCAAGACATCCAAGTCGCTGACGGAAGCGTACGATGCCAGCTACGAGCCGATGGGCGCCGATGTGTTCTTCTcatcgctgcagctgcagagcGTGTCGACGGGCGGCAAGTCGAGTGCCACACGGCCGGAGCGTGGCAAGGACGAACAGAGCTGGTCCGATCCGCTGCTGAAGGCGATGCGCGAGCACGAGGAGAGCGAGTTTAAGCCCCTGAAATTTGTGCACACGCCGGAGGCGagcgaggacgaggacgacgacgatgacggcgatggcgacgaGTTTGAGGGCGACGACGATGATCCAGAGCACGATCACGATCACGATCACGACCACGATCACGATCACGATGCTGACGAGGATTACGAGGTGGCGCGTCGTCACTCGCCACCCGCCgtgcctgccacacacacggGCGGCAAGTGGAAGCCGGAGCATCGTCCCCAGTTGCGGCACACGCATCTCGAACGCATCTCGCCCAGCTGGGACGAGCCGCCCGAggaacagccacagcaacagcaaccacaaccacaacaacatgaCGATCATCCGCCAGCGGAGCATACGCATGGCAAATGGGTGCCGGGCAGCAAGCAGCTGGAGTATCGCGAGAACATCGATCTCACGAAGCTGCAGCAACCGAATGCCAGCTACTGGTGCAACATCTGCTGTCGCCGCCTCAAGACGCGCCTCAACTACGAGCAGCATTTGCGCAGCGCCTATCATCAGCGACGCGCCGAAGCCGAGCGCCAATTGGAGCAGGCGAATCTCGAAGTCGGCAATCTGACGCTCACCAAAGCCTTCCAGCCGGACGAGCAGCTTCTGCAGCATCGTCTCCAGCGTCGGCGTCGCCAGCGCCATCGTCGCAcgcagctgctgcgctgcgAGCTCTGCCGGCACAGCATGGCCCGCCACCTGATGGGCAAGCACCTCATCTCGCACTATCACTACCgccggctgcagcagcagacgcagcCGCGCCGCCAGAACGCGCTCCACGCCATCCTCGAGCACATGGGCAGCATCGTGCGGCAGGCGCCCTTCCAGTGTCTGCCCTGTCGATTCTACGCCAACACCGAGCAGGCTTTCCAGACTCATTGGCGCTCCGCTTCGCACGTGCAACTGACCGAGCGGCTGGGCGGCGACTTCTGGTGCAGCTACTGCCAATTCGAGTGTGGCAGCAACGAGGCGATGTGGCAGCATCTGGTGGACGCCACGCACAAGGAGGTGCTGCTGGCGCTCAATCGATCCGTGCCCGTTTGCATTGCCCAGCGTCGTCGGCTGCGCTGCGGCATCTGCAGCGAGAGCTTCCTCTACAACGTGCAACTGCGTCGTCATCTGGCCAGCGAGCACGTCGGTGTCGCGGCCACACAGCAGGGCAGCGCAGCGGACGAGTATCAGTGTCGCTTTCGCTGCGACATCTGTGGCGTAGCACAGAGATCGCGAGTGGCGCTGCAGCGCCATGAGAAGCACAAGCATCGCCTGGCTCGCTACTATTGTGCGCTGTGTCAGCTGCAGTTTGAGACGCCGCTGGAGGCGCGACGGCATCGCAACCTCATGCAGCACAAGCGGCACGCCAAGCGGCAGCTGCCCAAACGCGGCAAGGCGACGGCGCAGCCAGAGCGCGAGCTGGAGCAAATGCTGCGCGAAGTGCtcgaggagcagcagccgGAAACAGAAATGCTAATGGACACTAAGAAGCAAGGCTGCGGCAGTTGTGCGCTCAGCTTTGAGACGCCGCAGGCGCTGGTCGAGCACCGACGGCTCTGCCATCCCATGGACAATCACGCCTGCCTcagctgtggcagcagctTCCAGTCCGCCCAGGCGCTGGGGCGGCACACACGCAGCTGCCAGCCTCCACTGGCCACCACCTCCACCTCAACTTCGAATAATTCGTATCAATGCGATGAATGCGGCTTCAGTGCGCAGTACAAATCGGATCTGCTCTATCATCGTTTCTTTCACACTCGCGACTCTTCGACGGCCATCGGCAAGAACGAACTGCTTCCATGTCCACTGTGCCCCAAGCAGTTCCGCAAGCACTCGCTGCGCGCCCATCTGCGCAATCACACCGACGAGCGCATCTTTGAGTGCGCCGTCTGCTCGTCGAAGTTCGCCAGGCGCAGCAATCTCAAGAATCACATGGCCAGCGTGCACAGCCAGCCGACTACGGCAACAACCGTCAAGGCGAGGAGCCAACAGCATGCCAGGACGGTTGGGGAGAAGCCTCGCAGGAAATTTCAGTGCGACACCTGCGGCAAAACTTTGAACAAAAAGTAA
- Protein Sequence
- MHNPTDELEDTHLCIRCNATIVGLSKYIEHRKSNCLSLARNPTAKQVATTTTTAPTADHSYEDSFHFAEPEAPSSYLRKTSASHGGKTSKSLTEAYDASYEPMGADVFFSSLQLQSVSTGGKSSATRPERGKDEQSWSDPLLKAMREHEESEFKPLKFVHTPEASEDEDDDDDGDGDEFEGDDDDPEHDHDHDHDHDHDHDADEDYEVARRHSPPAVPATHTGGKWKPEHRPQLRHTHLERISPSWDEPPEEQPQQQQPQPQQHDDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQPNASYWCNICCRRLKTRLNYEQHLRSAYHQRRAEAERQLEQANLEVGNLTLTKAFQPDEQLLQHRLQRRRRQRHRRTQLLRCELCRHSMARHLMGKHLISHYHYRRLQQQTQPRRQNALHAILEHMGSIVRQAPFQCLPCRFYANTEQAFQTHWRSASHVQLTERLGGDFWCSYCQFECGSNEAMWQHLVDATHKEVLLALNRSVPVCIAQRRRLRCGICSESFLYNVQLRRHLASEHVGVAATQQGSAADEYQCRFRCDICGVAQRSRVALQRHEKHKHRLARYYCALCQLQFETPLEARRHRNLMQHKRHAKRQLPKRGKATAQPERELEQMLREVLEEQQPETEMLMDTKKQGCGSCALSFETPQALVEHRRLCHPMDNHACLSCGSSFQSAQALGRHTRSCQPPLATTSTSTSNNSYQCDECGFSAQYKSDLLYHRFFHTRDSSTAIGKNELLPCPLCPKQFRKHSLRAHLRNHTDERIFECAVCSSKFARRSNLKNHMASVHSQPTTATTVKARSQQHARTVGEKPRRKFQCDTCGKTLNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472632;
- 90% Identity
- iTF_00520973; iTF_00509448;
- 80% Identity
- -