Basic Information

Insect: Drosophila albomicans
Gene Symbol: -
Assembly: GCA_009650485.1
Location: NC:26241602-26303941[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.3 1.4e+02 2.8 2.3 3 23 295 317 293 317 0.92

2 15 2.7 1.6e+02 2.6 0.5 3 21 458 476 457 480 0.92

3 15 0.12 7 6.9 0.1 2 23 502 524 501 524 0.92

4 15 0.025 1.5 9.0 0.9 1 23 543 566 543 566 0.95

5 15 0.13 7.7 6.8 0.3 1 22 571 592 571 595 0.91

6 15 0.28 17 5.7 2.4 3 23 645 666 643 666 0.94

7 15 0.28 17 5.7 0.2 1 21 671 691 671 692 0.92

8 15 0.25 15 5.9 2.9 1 23 711 733 711 733 0.93

9 15 9e-05 0.0054 16.7 1.4 2 23 746 766 745 766 0.96

10 15 1.2e-06 7.2e-05 22.6 0.7 1 23 772 795 772 795 0.97

11 15 0.00021 0.012 15.6 0.5 1 23 828 850 828 850 0.97

12 15 0.028 1.7 8.8 3.3 2 23 858 881 857 881 0.96

13 15 0.15 9 6.6 6.4 1 23 886 910 886 910 0.97

14 15 0.0053 0.32 11.1 0.9 3 23 917 937 915 937 0.97

15 15 0.00022 0.013 15.5 4.2 1 21 943 963 943 968 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.3	1.4e+02	2.8	2.3	3	23	295	317	293	317	0.92
2	15	2.7	1.6e+02	2.6	0.5	3	21	458	476	457	480	0.92
3	15	0.12	7	6.9	0.1	2	23	502	524	501	524	0.92
4	15	0.025	1.5	9.0	0.9	1	23	543	566	543	566	0.95
5	15	0.13	7.7	6.8	0.3	1	22	571	592	571	595	0.91
6	15	0.28	17	5.7	2.4	3	23	645	666	643	666	0.94
7	15	0.28	17	5.7	0.2	1	21	671	691	671	692	0.92
8	15	0.25	15	5.9	2.9	1	23	711	733	711	733	0.93
9	15	9e-05	0.0054	16.7	1.4	2	23	746	766	745	766	0.96
10	15	1.2e-06	7.2e-05	22.6	0.7	1	23	772	795	772	795	0.97
11	15	0.00021	0.012	15.6	0.5	1	23	828	850	828	850	0.97
12	15	0.028	1.7	8.8	3.3	2	23	858	881	857	881	0.96
13	15	0.15	9	6.6	6.4	1	23	886	910	886	910	0.97
14	15	0.0053	0.32	11.1	0.9	3	23	917	937	915	937	0.97
15	15	0.00022	0.013	15.5	4.2	1	21	943	963	943	968	0.93

Sequence Information

Coding Sequence: ATGCACAACCAGCAGGAATCAGATGAGCTGGAAGACACGCATCTGTGCATCAAGTGCAATGCAACGATTGTGGGACTCAGCAAGTACATAGAGCATCGCAAAGGCAACTGCCTCAGCAACAATGCCAGAAATGCAGATACAAAGCAAgtggcagcgacaacaacaacaacaacggagaCGACTCCAACAACGGATCACAGCTACGATCACAGCTTTTCGCATTTCGCCGAGCCCGAAGCACCCAGCAGTTATTTGCGTAAAGCAAATGCCAGTCATGGGGGCAAGACATCCAAAACGCTGACCGAAGCCTACGATGCCAGCTACGAGCCGATGGGTGCCGATGTGTTCTTCTcatcgctgcagctgcagagcGTCTCCACGGGCGGCAAATCGAGTGCCACACGAGCAATGAACAACGAACGTGGAGGAAAGGAGGAGCAAGGCTGGCATGGAGATCCGCTGTTGAAGGCGATGCGCGATCAGGAGGAAAGCGATTTCAAGCCGTTGAAATTTGTGCATTCGCCCGAGGCAAGCGACGAAgaggatgatgacgatgatccAGATGACTTTGAGGCCGATGACGATGATCCAGATCACGATGCTGACGAGGATTACGATGTGACGCCACGTCGTCACTCGCCACCAGCTGTGCccgccacacacacaggtGGCAAATGGAAACCCGAACATCGTCCGGCGCagctgcaacacacacatctCGAACGCATCTCGCCCAGTTGGGATGAACCAGCCGAGGAGCAGCATCACGATCATCCGCCAGCGGAGCATACGCATGGCAAATGGGTGCCGGGCAGCAAGCAGCTGGAGTATCGCGAGAATATCGATCTGACCAAGTTGCAACAACCGAACGCAAGCTATTGGTGCAACATTTGCTGTCGCCGCCTCAAGACGCGTCTCAACTATGAGCAACACTTGCGCAGCGCCTATCATCAGCGACGCGCCGAGGCCGAACGACAGCTGGAGCAGGCGAATCTCGAGGGCGGCAATCTGACGCTCACCAAAGCCTTTCAACCCATTGAACTTGAACCACTTCGTCGCCagcgtcgttgtcgtcgtcagcGTCGCACGCAGCTGCTGCGCTGTGAACTCTGTCGGCACAGCATGGCCCGCCATCTGATGGGCAAGCATCTCATCTCGCATTATCATTATCGACGCCTGCAGCAACAGACGCAGCCACAGCGACAGAACTCGTTGCACGCCATACTCGAGCACATGGGCAGCATTGTGCGACAGGCGCCCTTCCAGTGTCTGCCCTGTCAATTCTATGCCAACACCGAGCAGGCCTTTCAGTCTCATTGGCGCTCCGCTTCGCATGTGGAGCTGACCGAGCGGTTAGGTGGCGACTTCTGGTGCAGCTACTGTCAATTCGAGTGTGGCAGCAACGAGGAGATGTGGCAGCATCTGCTCGACGCCACACACAAGGAGGTGCTCTTGGCCCTCAATCGATCCGTGCCGGTTTGCATTGCCCAGCGTCGACTGCTGAGTTGCGGAGTGTGCAGCGAACGGTTTCTCTACAATGCGCAACTGCGTCAGCATCTGGCCAACGAGCACGTTGAGGTGTTGGCCACACAGCAGGGCAGCGCATCGGATGAGTATCAGTGTCGCTTTCGCTGCGACATCTGCGGCGTGGCACAGAGATCCCGTGTTGCGCTGCAGCGTCACGAGAAGCACAAGCATCGCCTTGCGCGCTACTATTGTGCGCTGTGTCAACTGCAGTTCGAGACGCCGATGGAGGCGCGACGTCATCGCAATCTGATGCAGCACAAGCGGCATGCCAAGCGACTGATGCCCAAACGGGCAAAGATGAGGGCAGGGCAGCCAGAGCGTGAACTGGAGCAAATGTTGTGCGAAGTGCTCGAGGAACAGCAGCCAGAAACGGAAAAAGACAACCTAGATGCCAAGAAGCAATGCTGCAGCAGTTGTGCGCTCAGCTTTGAGACTCCTCAAGCGCTGGTCGAGCATCGTCGTCTGTGCCATCCCATGGACAATCACGCCTGTCTcagctgtggcagcagctTTCAGTCCGCTCAGGCGTTGGGTCGACACACACGCAGTTGCCAACCGCCTTTGGCCTCCAGTTCCAGCCACTGCAATCCACCGTCGAACTCTTATCACTGTGATGAATGCGGCTTTAGTGCGCAATACAAATCGGATCTGCTCTATCATCGTTTCTTTCACACGCGCGACTCGGCGATTGGCAAGAACGAGCTGCTgccatgtccgctgtgtccgaAGCAGTTTCGCAAACACTCGTTGCGCGCCCATCTGCGGAATCACACCGATGAACGCATCTTTGAGTGCGCCGAGTGCTCGACCAAGTTTGCGAGGCGCAGCAATCTCAAGAATCACATGGCCACCATGCACGGTCATGGTCGCCAGGAacaagcgacaacagcaacaccgaGCAATGTTAAGCGTAAGCAATTGACCAAGACAAATGCGGAGAAGCCACGAAAGACTTTTCAGTGTGGCACCTGTGgcaaaatattgaacaaaAAATCCTCTTTGAAGGACCACGAAATGCTTCACACTGACCTCGAGCGCAGTCTTCGCTGTCATTTTGAGGGCTGCCACTATTCAACCTTTCGCAGTGCAGCCCTGAAAACGCACCTGCTCTCCCATGCCGAGGGCAGTCACAAGTGTTCCCACAACAATTGCAGTTATGTGGGCAAAAGTGCTCAGCACTTAAAGAGGCACCTCAATTCGCATGAGAGCGAACGCTTTGGCTGCGATCAGTGTGATTTCAAGGCGCGTCTCAAGGGTCAACTGAAGCGACACATGCTTCGTCACACGGGCAGCAAATCGCACAAATGTCCGCACTGTGACTACCAATGCAGCACGTTGGATAACCTGCGGAATCACATCATCAAGACGGGCAAACATCCCGGCAAATTCATCTACGAGTGTGCCTCCTGCATGGCTGAAGATCCGCACTCAACCAGCATCTTCAAGAGCAACAGTTTCAAGGAGTATCAACTGCATTTACGCACACACAATTCGCCATTGGcataa
Protein Sequence: MHNQQESDELEDTHLCIKCNATIVGLSKYIEHRKGNCLSNNARNADTKQVAATTTTTTETTPTTDHSYDHSFSHFAEPEAPSSYLRKANASHGGKTSKTLTEAYDASYEPMGADVFFSSLQLQSVSTGGKSSATRAMNNERGGKEEQGWHGDPLLKAMRDQEESDFKPLKFVHSPEASDEEDDDDDPDDFEADDDDPDHDADEDYDVTPRRHSPPAVPATHTGGKWKPEHRPAQLQHTHLERISPSWDEPAEEQHHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQPNASYWCNICCRRLKTRLNYEQHLRSAYHQRRAEAERQLEQANLEGGNLTLTKAFQPIELEPLRRQRRCRRQRRTQLLRCELCRHSMARHLMGKHLISHYHYRRLQQQTQPQRQNSLHAILEHMGSIVRQAPFQCLPCQFYANTEQAFQSHWRSASHVELTERLGGDFWCSYCQFECGSNEEMWQHLLDATHKEVLLALNRSVPVCIAQRRLLSCGVCSERFLYNAQLRQHLANEHVEVLATQQGSASDEYQCRFRCDICGVAQRSRVALQRHEKHKHRLARYYCALCQLQFETPMEARRHRNLMQHKRHAKRLMPKRAKMRAGQPERELEQMLCEVLEEQQPETEKDNLDAKKQCCSSCALSFETPQALVEHRRLCHPMDNHACLSCGSSFQSAQALGRHTRSCQPPLASSSSHCNPPSNSYHCDECGFSAQYKSDLLYHRFFHTRDSAIGKNELLPCPLCPKQFRKHSLRAHLRNHTDERIFECAECSTKFARRSNLKNHMATMHGHGRQEQATTATPSNVKRKQLTKTNAEKPRKTFQCGTCGKILNKKSSLKDHEMLHTDLERSLRCHFEGCHYSTFRSAALKTHLLSHAEGSHKCSHNNCSYVGKSAQHLKRHLNSHESERFGCDQCDFKARLKGQLKRHMLRHTGSKSHKCPHCDYQCSTLDNLRNHIIKTGKHPGKFIYECASCMAEDPHSTSIFKSNSFKEYQLHLRTHNSPLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00562788; iTF_00509448; iTF_00614536; iTF_00520973;
90% Identity: iTF_00562788;
80% Identity: -