Dust010065.1
Basic Information
- Insect
- Drosophila ustulata
- Gene Symbol
- MBD2
- Assembly
- GCA_035047365.1
- Location
- JAWNPT010000094.1:6622112-6623672[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-22 5.7e-19 67.5 0.0 1 74 7 75 7 78 0.94 2 2 1.4e-05 0.037 13.7 0.1 27 76 178 236 158 237 0.90
Sequence Information
- Coding Sequence
- ATGAATCCGAGCATTACTATTGAGCGTAAACGCGTTGACTGCAACGCACTACCCAAAGGTTGGCAACGCGAGGAAGTGCACAGAAAATCGGGCTGCAACTCAGCCGTTGATGTCTTCTACTACAGTCCCGCAGGCAAACGAATTGAAAGCAAACCGCAATTAGCAAGACAATTGGGCGCTGAGATGTTTGACATCAGCAACTTTGATTTCCAAACCGGCAAGATGCAGCTGCATCGTCAGATGCCGTCACCTTCGATATCGCTGTATCGCTGCAATGCACAGGGCGCCATCATCAGCAACGCTGTCGCTGCCGGCAATGCGGCGAATGCCTTGAAGCGCAAATTCAGTCGAACGCAACAGAATTcgaacagcggcagcaacaacatcaacactGGCAACAATGTGACGTCGatatcatcatcagcagcagcttcggcagtggcagcaacagcaacagcgacgacaACTGCAGCTAAtttgcggcaacaacagcaacaacaacagcagcaacagcaacaattcgAATTCAGTCGCGCCCTTCGCACAGATGTCTCCCTGGTGCCGCCGATTCGGCAGACTGCCTCCATATTTAAGCAGCCGGTGACAGTGGTGCGCAACCATGAGCAAAACAAAGTCAAGCACGACGCCAAGCACGGTGGCCAGGAGAAACCCAAGCAGCTGTTCTGGGAGAAGCGCTTGGAGCGCCTGCGCGCCTGTCACGACAACGGCGAGGAATTGGACGACATCTCACTGCCAAAAATCATTCGAACCGTGGGTCCCAACGTCAATGAGCAGACTGTGCTGCAATCCGTGGCCACAGCTTTACACATGCTCAATGCCGGGGTACATGGCCAGAGTTCGACAAAGGCGGAACTGACGAAGAATGCCATGGCATTCATGAATCCAGAGCAGCCGCTGATGCATGCGATAATCATATCTGAGGACGACATACGCAAGCAGGAGGATCGCGTCGGCTTGGCTCGTCGAAAACTGCAAGATGCTTTGAAGACATGA
- Protein Sequence
- MNPSITIERKRVDCNALPKGWQREEVHRKSGCNSAVDVFYYSPAGKRIESKPQLARQLGAEMFDISNFDFQTGKMQLHRQMPSPSISLYRCNAQGAIISNAVAAGNAANALKRKFSRTQQNSNSGSNNINTGNNVTSISSSAAASAVAATATATTTAANLRQQQQQQQQQQQQFEFSRALRTDVSLVPPIRQTASIFKQPVTVVRNHEQNKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDDISLPKIIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAIIISEDDIRKQEDRVGLARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593092;
- 90% Identity
- iTF_00509092; iTF_00589539; iTF_00595238; iTF_00608436; iTF_00557909; iTF_00583675; iTF_00520623; iTF_00553723; iTF_00472355; iTF_00562463;
- 80% Identity
- -