Dtru018359.1
Basic Information
- Insect
- Drosophila truncata
- Gene Symbol
- -
- Assembly
- GCA_008042515.1
- Location
- VNJQ01003892.1:31959-33355[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.55 2.6e+03 -1.3 0.3 35 48 33 45 19 48 0.74 2 3 6.7e-06 0.031 14.5 1.7 18 48 47 77 33 83 0.86 3 3 8.8e-06 0.041 14.1 0.1 22 48 133 159 128 162 0.82
Sequence Information
- Coding Sequence
- ATGCTAAGCGAAAACTACTGCTCTGAGGACGAATACAAGGAGGTACATGGAATCCGGAACCTTCGCTGCAGCCTGGCCAGATGCCCGTACAGGACAAACAGGTCCCACAACCTGTGGCGTCACGAGCAGCGACACAAACGCCCTGTGGAAACGAAGCCATTTGTGTGTCCCGTCTGCGTCTACAGCACTGATAAGATAGGAAACCTGAGGCGGCATGTGGCCATCCGCCACCCCAAAGAGGCTCCAGTCGCAAGGGATCCGGATGAGCCGGAGATCCAGTTGAAACCCGCAGGCACCCGCAGGATCCACTGCCAGGTGATGGGCTGCCGCTACGAAACGAATCGACCACATGACCTGAAGCGCCACATGGCGGTGCACAACAACGTTGAGAAGAGCCACAAGGAGTACAAGTGTTCCCTGTGCATGTACAGTTCGGATAGGAAGGCTAATCTCAAGCGGCACCTGGAGCTGCGGCACTCTGGCATTGAGGAAACCATACACACGGCCGAAGAACTGAACGAGGAACTGCATTGCTTAGAGGAAGAGGATCAAAGGCTGGAAGAGCAGGCGCAGCATGATGAGCTGTTCAACGAATTGATTGAGAACCTTGATGACGTGAAGGTCGAAATAGAGGAAGAGGAAGCTGTGGAGGAGTTTGTGTACGAGCAGCTgcatgaggaggaggaggagcctcCTCTGATCACAATATCCAAGCGCAAGCCACCGATGCTCCAAGGAGATATAAGTGACAAGCAAGTGATTGCTGTCAACATAAATGGTCAACTGCGTTGGTTCCAATCAATAGATCCGCCGCCTGGCGCATCtttaaaactgcaactggCCCTGGAGGAGCAGAAACAGCAGTCCGTTTCGGCCCAGCAACAAATGGAGGAGCTGGACGATGAGCTGGCCTTGTCCCTTGCCCAGCAGGACCAAGAGGAGGAACTGCTAGTGGAAATGCTAACCGAAGATCAGCCATCGGATAAGGATGTAGTCTGGAGTTTTCACATTTCCAACGAAAAGTTAGTAACCCCCCAAGAAGAATTTATCGAGGAGCCATCCAAAGAGTCAGATTTCCCCAATTGGTGGGATGATGGCAAATACACAAAGATGCAGAAAAATCAGACGTTTCGGAAACATGGGCGAAAGCCCTCGAAAGCTGTTGTGCAACGCATACTGCGTGATATCTATGACATATACTACAAGCCCTTCAAGGAGGAGCGCAAGCACTCCCAGGTCTTTCCGATCAAGGACTCATGGCTATGTGCTACCCGGATGACACGTATGCAAATAATTAAGGACATGTACTCGAAGCAGGGCACaaacaaaagttaa
- Protein Sequence
- MLSENYCSEDEYKEVHGIRNLRCSLARCPYRTNRSHNLWRHEQRHKRPVETKPFVCPVCVYSTDKIGNLRRHVAIRHPKEAPVARDPDEPEIQLKPAGTRRIHCQVMGCRYETNRPHDLKRHMAVHNNVEKSHKEYKCSLCMYSSDRKANLKRHLELRHSGIEETIHTAEELNEELHCLEEEDQRLEEQAQHDELFNELIENLDDVKVEIEEEEAVEEFVYEQLHEEEEEPPLITISKRKPPMLQGDISDKQVIAVNINGQLRWFQSIDPPPGASLKLQLALEEQKQQSVSAQQQMEELDDELALSLAQQDQEEELLVEMLTEDQPSDKDVVWSFHISNEKLVTPQEEFIEEPSKESDFPNWWDDGKYTKMQKNQTFRKHGRKPSKAVVQRILRDIYDIYYKPFKEERKHSQVFPIKDSWLCATRMTRMQIIKDMYSKQGTNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00541439;
- 90% Identity
- iTF_00613119;
- 80% Identity
- iTF_00613119;