Dmay007083.1
Basic Information
- Insect
- Drosophila mayri
- Gene Symbol
- -
- Assembly
- GCA_008042485.1
- Location
- VNJN01003720.1:66249-67637[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-05 0.055 13.5 1.0 16 48 45 77 30 81 0.84 2 2 1e-05 0.041 13.8 0.2 24 48 135 159 128 162 0.81
Sequence Information
- Coding Sequence
- ATGCTTAGCGAAAACTACGACTCTGAGGACGAATACCAGGAGCTTAATGGAAACCGGAGCCTACGCTGCAGCCTGGCCAGATGTCCCTACAGGACAAACCGGGCCCACAACCTGTGGCGGCATGAGGAGCGTCACAAACGGCCTGTGGAAAAGAAGCCATTTGGCTGTCCCGTCTGCATCTACAGCACTGATAAGATCGCAAACCTGAAGCGGCATGTGGCCATCCGGCATCCCAAAGAGGCCCCACTCGCGGCGGATCCGGATGAGCCAGAGATCCAGTTAAAATCCGCGGGCGCCCGCAAGATACACTGCCAGGTGATTGGCTGTCGATACGAAACGAATCGAGCCCATGACCTTAAGCGTCACATGGCGGTGCACAACAATGTTGAGAAGAGCCACAGGGAGTACAAGTGTTCCCTGTGCATGTACAGCTCGGATAGGAAGGCTAATCTCAAGCGGCACCTGGAGCTGCGACACTCTGGCATTGAGGATGCCATACAGACGGCCGACGAGCTGAATGAGGAGCTGCACTGCctagaggaggaggaggagcggaGGATGGAAGAGCAGGCGCAGCATGATGAGATGTTTAACGAATTGATAGAGAACCTTGACGAAGTGGAGGGAAAGGAAGCTGTGGAGGAATTTGTGTATGAGAAGTtagaggagcaggaggaggacccTCCCCTGATCACAATATCCACGTGCAAGCCACCGATGCTTCAAGGAGACATAAGCAACAAGCAAGTGATTGCTGTCAATGTGAATGGCCAGCTGCGTTGGTTCCAATCAATCGATCCGCCTCCTGGCGCTTCCTTAAAATTGCAGCTGGCCCtggagcagcaggaacagcagGCTGCTTCGGCCCAGCAGCAAATTGACGAGCTGGACGATGAGCTGGCCTTGTCCCTGGCCCAGCAGGAcgaagaggaggagctgctTGTAGAAATGCTAACCGAAGAGCAGCCGTCAGATAAGGATGTAATCTGGAGTTTTCACATTTCCAACGAAAAGTTGGTGGCATCGAAAGAACAATATATACAGGAGACGCTGGAGCCATTCAAAGAGTCCGATTTCCCCAAATGGTGGGACGATGGCGAATACACAAAGATGCAGAAAAACCAAACGTTTCGGAATCACCGGCGAAAGCCCTCGAAGGCTGTTGTGCAACGAATACTGCGTGAGATATATGACATATACTACAAGCCCTTCAAGGAGCAGCGCAAGCCCTCCCAGGTCTTCCCAATCAAGGACTCATGGCTATGTGCTACCCGGCTGACACGTATGCAAATAATTAAGGACATGTACTCGAAGCAGGGCAcatga
- Protein Sequence
- MLSENYDSEDEYQELNGNRSLRCSLARCPYRTNRAHNLWRHEERHKRPVEKKPFGCPVCIYSTDKIANLKRHVAIRHPKEAPLAADPDEPEIQLKSAGARKIHCQVIGCRYETNRAHDLKRHMAVHNNVEKSHREYKCSLCMYSSDRKANLKRHLELRHSGIEDAIQTADELNEELHCLEEEEERRMEEQAQHDEMFNELIENLDEVEGKEAVEEFVYEKLEEQEEDPPLITISTCKPPMLQGDISNKQVIAVNVNGQLRWFQSIDPPPGASLKLQLALEQQEQQAASAQQQIDELDDELALSLAQQDEEEELLVEMLTEEQPSDKDVIWSFHISNEKLVASKEQYIQETLEPFKESDFPKWWDDGEYTKMQKNQTFRNHRRKPSKAVVQRILREIYDIYYKPFKEQRKPSQVFPIKDSWLCATRLTRMQIIKDMYSKQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00478373; iTF_00489008; iTF_00489034; iTF_00613119; iTF_00613163;
- 90% Identity
- iTF_00478373; iTF_00489008; iTF_00489034;
- 80% Identity
- -