Basic Information

Insect: Drosophila truncata
Gene Symbol: -
Assembly: GCA_008042515.1
Location: VNJQ01004602.1:159431-162494[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 6.2e-07 5.4e-05 23.5 3.2 1 23 201 224 201 224 0.95

2 17 3.3e-05 0.0028 18.1 0.2 1 23 231 253 231 253 0.97

3 17 0.18 16 6.3 0.1 2 23 285 306 284 306 0.94

4 17 2.8e-05 0.0025 18.3 3.3 1 23 397 420 397 420 0.97

5 17 0.21 19 6.1 0.6 1 19 427 445 427 448 0.93

6 17 0.058 5.1 7.8 6.4 1 23 457 479 457 479 0.95

7 17 6e-06 0.00052 20.4 0.4 1 23 486 509 486 509 0.97

8 17 0.00034 0.03 14.9 2.4 2 23 517 538 516 538 0.96

9 17 0.016 1.4 9.6 0.1 2 21 565 584 564 585 0.94

10 17 0.007 0.61 10.7 2.6 1 23 637 660 637 660 0.98

11 17 0.0025 0.22 12.1 0.8 1 23 697 720 697 720 0.97

12 17 0.00011 0.0096 16.4 1.6 2 23 753 775 752 775 0.95

13 17 0.0024 0.21 12.2 0.1 1 23 789 811 789 811 0.95

14 17 1.6e-05 0.0014 19.1 1.0 1 23 817 839 817 839 0.99

15 17 2.8e-07 2.5e-05 24.5 2.6 1 23 845 867 845 867 0.98

16 17 3.2e-05 0.0028 18.1 3.8 1 23 873 895 873 895 0.97

17 17 2.2e-05 0.0019 18.6 0.5 1 22 901 922 901 925 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	6.2e-07	5.4e-05	23.5	3.2	1	23	201	224	201	224	0.95
2	17	3.3e-05	0.0028	18.1	0.2	1	23	231	253	231	253	0.97
3	17	0.18	16	6.3	0.1	2	23	285	306	284	306	0.94
4	17	2.8e-05	0.0025	18.3	3.3	1	23	397	420	397	420	0.97
5	17	0.21	19	6.1	0.6	1	19	427	445	427	448	0.93
6	17	0.058	5.1	7.8	6.4	1	23	457	479	457	479	0.95
7	17	6e-06	0.00052	20.4	0.4	1	23	486	509	486	509	0.97
8	17	0.00034	0.03	14.9	2.4	2	23	517	538	516	538	0.96
9	17	0.016	1.4	9.6	0.1	2	21	565	584	564	585	0.94
10	17	0.007	0.61	10.7	2.6	1	23	637	660	637	660	0.98
11	17	0.0025	0.22	12.1	0.8	1	23	697	720	697	720	0.97
12	17	0.00011	0.0096	16.4	1.6	2	23	753	775	752	775	0.95
13	17	0.0024	0.21	12.2	0.1	1	23	789	811	789	811	0.95
14	17	1.6e-05	0.0014	19.1	1.0	1	23	817	839	817	839	0.99
15	17	2.8e-07	2.5e-05	24.5	2.6	1	23	845	867	845	867	0.98
16	17	3.2e-05	0.0028	18.1	3.8	1	23	873	895	873	895	0.97
17	17	2.2e-05	0.0019	18.6	0.5	1	22	901	922	901	925	0.90

Sequence Information

Coding Sequence: ATGAAGCTGCCGGTAATGTGTCGCACCTGCGACTCCACGGACACCGACAATCTTCTAAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAAGCTGTTATCGGAGATTTTGATGGAGCTCACCGACATCCATGTGGAGGCGAGTGGCAGCCAGAAGTTGCCACAGTGCTTGTGCAGCAGCTGCACCAAGAAACTAATGGCAAGTTATTGCTTTGTGAAGCAGGCGCTGGCCGCCAATGAAATGCTGATGAAGCATTTGAAAAACAGCTCTGCCACTGACTGCCTGCAGGAGGCACCTATGGAGCTGTGCGCCGAGCAGCATGTGGAGGTCAAAATGGAGACGGAGGACGAGGACTGTGGGGAGAAGGATGCTGGTATCAACTGTTCTGAGCTACCAGAACCGGGCGAAGGGGATGTGGAGAACAAGAAGTCTGTGGATCCGCTGACCATGATTGAGACGGTGAAGCTGGAGGGAGAGCCGCCAAGTGTGGAGAGAACAGCGGAAGAAGAACCCACCTCGGATTTTGAGGATGAAGACTCCCTGGACAACCTGCCCCTAAATAAACGcatacaaaaatggaaagccAGAGGAATGTCTGTTTTCAAGTGCCACGATTGCCCGCGAAGTTTCAAGCGAAACGATTACCTAAAACGCCATGAAATTCGTGTGCATCAGCCGGAGACCCATTGGTTCGCCTGTTCCCTTTGCGTTCGCAAATTCAGTCGCAGCGAAGCTCTCGAGGCTCACCTCAAGGTTCACCGAAACTCCAAGCGTTCGGCCAACATCAGCGAGCACAAAAAGGCCAAGGCGGTGGATCTGAATCTCTGCAAACCGCATGGCTACAAGCTCATCGAGTGCATGATCTGCCAGAGTCAATACAACAAGATTGCGGATCTGCGTAGGCACTTGGAAGAGCATCCGGATATTGTCAGCCTAGGCGTACGTCCTAACGTGGAACCTAATGAGCTGGCGGAACTTTTTTATCCCGACTCCAAGGACTTGGATGAGGAACAGTTGATCAGTTTAATTCGCAAAGATCTGGCATCGGGCATTTATCAGCGTTTCTACTCGATAACCAACCAAAGTGGCTATGAAATGGATTTGGACAGCTCGGAGACGGATAGCGATGTGGATGGTGAGCCCGAGGATCGGCAGAATAAGAGGAGAAGCAAGAAACGCAAGGGTAGCTACACCTGCGAACTGTGTCAGCAGAAGTTTACGCGGAAATACCAGCTTTATGATCATCAAAGGCAGAGCCACAGTTGGTCTGAGGCTCCGCATGTTTGCGGGCGTTGTGATGGACGCTTTGTtagcctgcagctgctgcggcaTCACAACGAGTCGCAGTGTCGGAATGCACAGAAGCGCTTCCTTTGCCACAAATGTCCGCTACGCTTTCGGTGGAAACACAATTTGAAGACCCATTTCCGGGAGCATAGGATAACAAACCAAACCTTCGAGTGTCCCGAATGCAAGCGTGTCTTTGACAAAAAGAAATCCCTCACCGTTCACCTGCTCAGCGTCCATGCCGAGGAATCAAAGCTAATACCCTGCCAGTGGTGTAGCCGCAAGTTCTATCGCCATGATTACCTGGTAAAGCATTTGAAGCGGCATGGACTCAAGGAACAGGACATTCCTCTGGCAGAGACTTTAATAGCGGCCACTTCGCGGCCAAATGGAGCAAAGAGAATAACCTGTCGGATGTGCAATCTGCATTTTGAAAGAATTGTGGATCTCCGAGCTCACATTCAACTCGAGCTGAAGCTGTCATTGTCGCTCCATCAAAGCTACGACTCGCCGCATAATTATTCGATAACAAACGCGTCTGGTTTCGAGTTGCAGCTGGAGGATTCGGAGACAGAGGACGAAATGCAGTcaagtggcggcggcggcagcagtcGTCATGTTTACATCTGTGAGCTGTGCAGTGTGCAGTGCAAAAGGAAATTCGAAATGATTCAGCATCAGAGGACAATGCATCGTTTTGACAAAATGCCACACGAATGCGATGATTGCATCTTCAAGTGTGTGTCCAAGagCATCATGGATCACCATCGGCTGGGGCAGTGCAGCAGCAAGGAGAAGATGTACACCTGCAGCAAGTGCTCCTACAAGTTCATGTGGCCCGAGAACCTAGAGCAGCATTTGCGATTGCAGCACAGTGAAGCTTCCTCTGCGAGCAATCCctcaggcggcggcagagcaCAGGAGGACCTGGATAAAGAGACCGCAGGCGAAGATGGTGTCCCCTTATTGCAGTGTCCCCATTGCGATCGCACTTACCAAATGAAATCCCGCCTCAACAATCACATTCGCGATGTCCATGTAAACGGCGATCGCAAGCGCAAGGAGGCCATTAAGCGTTTCTTGTGTTCTCTGTGCGGCATGGAGACTCGATCGGCGGCTGCTTTGGTAACGCACACTCGGCGTCACACTGGTGAAAAGCCCTTCAAGTGTGATTTGTGTGAGATGGCCTTTCCCAGGCATTCGGAGTTGGCCTCCCATCGACGCATGCACACGGGTGAAAAGCCATTCCACTGCACAGTTTGCGGCAAGGATTTCGCTCGCTCTGACAAGCTTAAGCGCCACATGCTCACCCACAGCGGCCTGAAGCCGCACAAGTGTACGTACTGCGAGAAGAGCTATCGCCAGGCCAAGGATCTGAAGCTCCACCTGCAGCAGCACACCGGCGAATGTCCCTTTGTTTGCGGCACTTGCGGCGAACGGTTCATACAGAGCAGCACCCTGGAGAAGCACCGTCTGATGCGACGTCACTTTGATGAAGTGGAAGCCTGGTTAAGgcgtcaaaaataa
Protein Sequence: MKLPVMCRTCDSTDTDNLLKLATPSKKYPDKLLSEILMELTDIHVEASGSQKLPQCLCSSCTKKLMASYCFVKQALAANEMLMKHLKNSSATDCLQEAPMELCAEQHVEVKMETEDEDCGEKDAGINCSELPEPGEGDVENKKSVDPLTMIETVKLEGEPPSVERTAEEEPTSDFEDEDSLDNLPLNKRIQKWKARGMSVFKCHDCPRSFKRNDYLKRHEIRVHQPETHWFACSLCVRKFSRSEALEAHLKVHRNSKRSANISEHKKAKAVDLNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPDIVSLGVRPNVEPNELAELFYPDSKDLDEEQLISLIRKDLASGIYQRFYSITNQSGYEMDLDSSETDSDVDGEPEDRQNKRRSKKRKGSYTCELCQQKFTRKYQLYDHQRQSHSWSEAPHVCGRCDGRFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECPECKRVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSRPNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYDSPHNYSITNASGFELQLEDSETEDEMQSSGGGGSSRHVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRLGQCSSKEKMYTCSKCSYKFMWPENLEQHLRLQHSEASSASNPSGGGRAQEDLDKETAGEDGVPLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAIKRFLCSLCGMETRSAAALVTHTRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHRLMRRHFDEVEAWLRRQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00581676;
90% Identity: iTF_00531787;
80% Identity: -