Dtri008407.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila triauraria
Gene Symbol
-
Assembly
GCA_014170255.2
Location
CM024334.1:14700261-14710511[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.6e-05 0.0012 19.1 2.1 1 23 201 223 201 223 0.97
2 18 5.2e-06 0.0004 20.7 0.4 1 23 229 251 229 251 0.97
3 18 0.00077 0.059 13.8 0.9 1 23 257 279 257 279 0.95
4 18 1.1e-05 0.00085 19.6 3.1 1 23 285 307 285 307 0.97
5 18 2.5e-05 0.0019 18.5 4.7 1 23 313 335 313 335 0.99
6 18 4.6e-05 0.0035 17.7 5.7 1 23 341 363 341 363 0.97
7 18 2.2e-07 1.7e-05 24.9 4.3 1 23 369 391 369 391 0.98
8 18 8e-08 6.2e-06 26.4 2.4 1 23 397 419 397 419 0.97
9 18 4.7e-05 0.0036 17.6 6.7 1 23 426 448 426 448 0.97
10 18 8.1e-05 0.0063 16.9 6.5 1 23 454 476 454 476 0.98
11 18 7.3e-06 0.00056 20.2 4.5 1 23 482 504 482 504 0.98
12 18 5.3e-06 0.00041 20.6 8.1 1 23 510 532 510 532 0.98
13 18 4.3e-06 0.00033 20.9 7.6 1 23 538 560 538 560 0.97
14 18 4.8e-07 3.7e-05 23.9 7.7 1 23 566 588 566 588 0.98
15 18 0.00015 0.012 16.1 9.5 1 23 594 617 594 617 0.95
16 18 5.3e-05 0.0041 17.5 0.9 1 23 623 645 623 645 0.98
17 18 0.00058 0.045 14.2 3.4 1 23 655 677 655 677 0.97
18 18 6.6e-06 0.00051 20.3 1.6 1 23 683 706 683 706 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGCTCGGTGCCATCAGTTGTAGCCCCCGTTGTGACCACTGGTGGGACGACGATCACCTTGGGCGGCCCACCACATCTACCCAAATCGGAGCACAAGGAGGATGGCAAGCCGCCGCACGGCATTGAGATGTACAAGGTTAACATCGAGGACATCTCTCAGCTCTTCACCTATCACGAGGTCTTTGGCAAGATCCATGGCGATGCCACTAGTCATGCGGCCAGTGCGGCAGCAGCAGCCGCAGCAGCGTCTACAAATAATGCCGCTGTAGCGGCAGTAATGGCCTCCGCCAATGCGGCGGCGGCGGCAGCAGCAGCTGCATCGGCAGCGGGTGGAGGATTGCCGCCGGCCACCAGCGGCAATGGGGGCCAGCAGGTGACGGTTACGACGACCAGCAGCTCGACGGCCAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATACATGGCGTGGACGGCAGCGGCAATGGCGGCGGCGGCAACGGCGGGCAGAACGTGGCGCTGGCGCCGGACGGTACGCCAATTGCGACGGGGACGCACGTCTGCGACATTTGCGGCAAGATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGCGAACGGAAGCCGTTCATGTGCCAGGTGTGTGGCCAGGGCTTCACCACATCGCAGGATTTGACGCGCCACGGCAAGATCCATATTGGCGGGCCCATGTTCACCTGCATCGTGTGCTTCAATGTGTTCGCGAACAATACGAGCCTGGAGCGGCACATGAAACGGCACTCGACGGATAAACCGTTCGCCTGCACCATTTGCCAAAAGACCTTTGCCCGCAAAGAGCATCTGGACAATCACTTTCGTTCGCATACGGGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACGCCGCACCAGTGTGATGTCTGCGGCAAGAAATATACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCACACAGCAGGCGAGACGCCGCACCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGCTTAACCACGTGCGCCAGCACACGGGAGAGTCGCCACACCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTCAACCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTTACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAGTCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACGCGCAAGGAGCACCTGACGAACCATGTGCGCCAGCACACGGGCGACTCCCCGCACCGCTGCTCCTACTGCAAGAAGACGTTCACGCGGAAGGAGCACCTGACGAACCATGTGCGCCTCCATACGGGCGACTCGCCCCACAAGTGCGAGTACTGCCAGAAGACGTTCACGCGGAAGGAGCATCTCAACAACCATATGCGCCAGCATTCGAGCGACAATCCGCACTGCTGCAATGTCTGCAATAAGCCGTTCACGCGCAAGGAGCACCTGATCAATCATATGTCGCGTTGCCACACCGGCGATCGGCCCTTCACCTGCGAGACGTGCGGCAAATCGTTCCCGCTCAAGGGCAACCTGCTCTTCCATCAGCGCAGCCACACCAAGGGCCAGGAGATGGAGAGACCCTTTGCCTGTGAGAAGTGCCCCAAGAATTTCATCTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACTCTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCATTCGGCCACAACCACGATGCACACCATCCAGCAGATCACGGCTGGTGCGGCGGGCGGTGCCGGTGCCGTGCAGCTAACACCGGGCCTGGTGCCTCTGCTCTGCTATGCTTTGGTGAGTTGTCCCAGCTAG
Protein Sequence
MQHVSAASSVPSVVAPVVTTGGTTITLGGPPHLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDATSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAGGGLPPATSGNGGQQVTVTTTSSSTASSGGSTTSGGTTTTAGELLMPKMEGGIHGVDGSGNGGGGNGGQNVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLLCYALVSCPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00505532;
90% Identity
iTF_00507738;
80% Identity
-