Basic Information

Insect: Drosophila tanythrix
Gene Symbol: MBD-R2
Assembly: GCA_035043275.1
Location: JAWNNC010000522.1:15097360-15101317[+]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-20 4.9e-17 61.4 0.1 4 76 450 520 447 521 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-20	4.9e-17	61.4	0.1	4	76	450	520	447	521	0.93

Sequence Information

Coding Sequence: ATGGGGCGCCGCTGCTGCGTTTCTGAATGTCCGTCGACGTCGCGGCTCTTTGAGCACCACGGCGTCACTTACCACTCGTTCCCAATGGACCCCGTCATACGGGCAATTTGGATCAAGAACTCGCGCACAAGTCTCGATCGATTGATTACAAAGAGTGTGCTTGTCTGTTCGCGTCACTTTCGACGGCTCGATTTTAATACCGTGCgcaatggaaaatatttgctaaAGCCGCGTGTTTTTCCCACCGTCTTTCCGTGGGGCAAAATGGAACCCGCTGAGATCGAGGCTGATCAGCGTGCACTGCAACAGGCGACAGTGGATGGAGTTGGGGTCAGCGGTACCACAAACAGTGCCTCCAGCGAAGACTTGATCAGAGCAACTGTGGACCAAATTGTTGCCCAAATCCATGCCGAGATTGCAGAGCGGAATGCAGCCGCGGCTGCTGCAGCCTTGGCAGCATCCAAAGCCGAAGCTGAAGTGCAAGCAGAAGCTGctaaagaagaagcagagtcTTCGGCACCTGCTGCTGAGATTAAAATGGATGCAACTGTATCAGAGGATTCCGTCGCTGCCGGCACAGCTGAGTCCGGTAACGAAACGCTGCCAGATGCCAGCAGTGCCAATTCCCCCTTGTCTGTCACATCCCCCAATTATGGACTCCCCACAAACCTGACGATTGGCGCTCGTCTCGAGGCGTTAAGCGCTGATGGCGCATGGCTGTCCGCACGTATCGTCGAAGTCAACGATAAGGAGGAGACGCTCCTTATACGCTTCGAGCGCAACAGCAAGCTAAAAGTGTTGCCCTCGACGAACGGCAGCTACCAGGAATGGATGGGTTTCAAATCGGATCGTTTGCGTCAGCGCATCAGCTCGCGTGTGCTGCCCGTCTTTGAGCTGGATGAGAAGTGCATGGCACGCTGGTCCGGACCGCGTAAATTTCCGGGCACTGTCAGGAAGCAGCTTGGCAGCGACACCTACGAGGTGCTCTTCGATGATGGCTACACAAAGAATGTGCGCGCCGTCCACATGACCAAGTTGCCGCGTCAGCTGCCAGCTGCGGTATCTGAGACAGCCAGTGAATCCCTGAGCGCAGAGTCAACAACAGTCCCACttgcagttggagttggaaTTAAAAGACCAAGCTCTGGTCCTACCAGCACCAATAAGAAGAGCAAGGCGACATCACAACGCAAGGACTGGCCATTACTGGATATGTCTACTTTGGATTTGGGTGCTTTGGGACTGCCGGACATACCGCATGATGGTGAATGGACCTGCCACTGGGTAAATGATCAACCCATTGGCACCGAAGGTTTTCTCATTGTGGGTGAGCATCAGAAGCCAACGGTAATTGTACACGATTGGCGGCTGCCGGATGGTTGGatcaagcacatgtatcaacgCTCCAATGTGCTGGGCAAGTGGGATGTCATTCTGGTATCGCCCAGTAGCAAACGATTTCGCTCCAAGTCCGATCTCAAGGTGTTTCTGGAATCGCAGGGCGAGGTCTACAATCCGGATGTGTACGATTTTAGTATTCATCGTCGACGCGCCAAGGACATCAATGcctatgtatatacacacgaCTATAGTCCGCAGCAGCCGGTCAAGCCAAAACCATTGGACGTCTCCCTGGACACTACTGCAACATTGCAAGATTTGAACGGCAGCAAATTATCGACTGTCACACCCTCATCTACGCCCATATCGGCCATGGGTACGCGACGCAATGCAACTGAGGAAAGTCAGTACATGGAAACACCAGTGGCCTCATTGGTGCCACCCGCGGAGCTGATGTCGCCTTCGCCACACGCCCAAGGAGTTGAGTCACTGCCGCCCACAGCTGATGCAGTTGCACCCAGCTCTGCTTCTGGCATGGAAGAGCATGGCGCCGTTGTTGTGGAAGATGGTTGCGCCTTCATTGGCGGTCTGAAAATTCATATAACCGACAATTTGTTCGTCTGCCCTCGCGAGGGTTGCGGCAAATCCTTCCGAAAAGAAGATTTTCTACAAATACACATCCGTCATTACCACAAGGAACTTGCCGagCACGTCAGTCACTGTCCTAAGATGCAGGAGCTGGCCGTTAAGCGCACGCATCTCTCATCAATTGAGCAGAACGATCAGACgcccaaaaatcaaatacccAACCAGCAGTTCTTTGCCAAGCTGCACCAGCAGGATTTACAGCAATCGCGATCTTTTCGACGTCACCCAGTGGGTACAGAAACATCGCCATCGGCTCGGGATACATCTCCAATCAGTGCAATAAAATCGGAACCGCTAACGTCACCAGAATCTGCATTAGCGACAGCTATAGCTGTTGGTCCTGTGACTAGTGAAGTTGCGACACCAATTCCTGTAGACTCAATCAAATCGGAAACACCAATCGCCACGACGTCGTCCAATCGATCTGTCAAACGTGCGCGTCCGTCATCTAGAAGACGTCAGTCTGGCTCACGTAAGAGCAGTCGTCAACGCACACAGCGTCGTCCAGTGAATTCATCTCAAAGAAGAATTCCTGCTACAGGCGGTAATTCGAGAAACTTGCCAGTCTCGGGGGTAGATCACGAGTCCCGTAACGATCCCAAGAAGCGACGCATAGGTACGTCGGGAACATCGGCTGGCTCGCCTGCTAACATCGTGTTGGTGCCGAGACCATCATCAAACGATTTAGTTGACATAAATGCAGCTTTACCGCCGCCGCCTGCTCCACCAATGGGCACCCAGACGCCGCAATACATCAATGAGAATGGAGAATTAATACGCATTGTGCGTATGCGGCAGGAGGAAATCATTAACTGTACTTGCTGCTACGGCGATGAGGATGGGCTGATGATACAGTGTGAACTATGCCTGTGCTGGCAGCACGGCCACTGTTACGGAATTTTCAAGGAGTCGGACGTGCCGGAGAAGTATGTCTGCTATATTTGCCGCAATCCGCAACGCATGCGCGAATCAATGCGCTTTAAACATGATCAGGAGTGGCTATTCGAGGGCAACTGCCAGTGGCTGGCTATCACACGCCTAATCAGCAGTCGTCCAAGAAGTTCGAACTTTTAA
Protein Sequence: MGRRCCVSECPSTSRLFEHHGVTYHSFPMDPVIRAIWIKNSRTSLDRLITKSVLVCSRHFRRLDFNTVRNGKYLLKPRVFPTVFPWGKMEPAEIEADQRALQQATVDGVGVSGTTNSASSEDLIRATVDQIVAQIHAEIAERNAAAAAAALAASKAEAEVQAEAAKEEAESSAPAAEIKMDATVSEDSVAAGTAESGNETLPDASSANSPLSVTSPNYGLPTNLTIGARLEALSADGAWLSARIVEVNDKEETLLIRFERNSKLKVLPSTNGSYQEWMGFKSDRLRQRISSRVLPVFELDEKCMARWSGPRKFPGTVRKQLGSDTYEVLFDDGYTKNVRAVHMTKLPRQLPAAVSETASESLSAESTTVPLAVGVGIKRPSSGPTSTNKKSKATSQRKDWPLLDMSTLDLGALGLPDIPHDGEWTCHWVNDQPIGTEGFLIVGEHQKPTVIVHDWRLPDGWIKHMYQRSNVLGKWDVILVSPSSKRFRSKSDLKVFLESQGEVYNPDVYDFSIHRRRAKDINAYVYTHDYSPQQPVKPKPLDVSLDTTATLQDLNGSKLSTVTPSSTPISAMGTRRNATEESQYMETPVASLVPPAELMSPSPHAQGVESLPPTADAVAPSSASGMEEHGAVVVEDGCAFIGGLKIHITDNLFVCPREGCGKSFRKEDFLQIHIRHYHKELAEHVSHCPKMQELAVKRTHLSSIEQNDQTPKNQIPNQQFFAKLHQQDLQQSRSFRRHPVGTETSPSARDTSPISAIKSEPLTSPESALATAIAVGPVTSEVATPIPVDSIKSETPIATTSSNRSVKRARPSSRRRQSGSRKSSRQRTQRRPVNSSQRRIPATGGNSRNLPVSGVDHESRNDPKKRRIGTSGTSAGSPANIVLVPRPSSNDLVDINAALPPPPAPPMGTQTPQYINENGELIRIVRMRQEEIINCTCCYGDEDGLMIQCELCLCWQHGHCYGIFKESDVPEKYVCYICRNPQRMRESMRFKHDQEWLFEGNCQWLAITRLISSRPRSSNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00535349;
90% Identity: iTF_00495105;
80% Identity: iTF_00607099;