Basic Information

Insect: Drosophila suzukii
Gene Symbol: -
Assembly: GCA_013340165.1
Location: WWNF01000006.1:131081-133538[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.6e-06 0.00045 20.4 0.6 1 23 274 297 274 297 0.95

2 11 0.0008 0.054 13.8 3.3 3 23 309 329 308 329 0.98

3 11 1.7e-05 0.0011 19.1 1.5 2 23 339 361 339 361 0.91

4 11 2.7e-05 0.0018 18.5 0.5 1 23 457 480 457 480 0.95

5 11 4.6e-06 0.00031 20.9 1.0 3 23 492 512 491 512 0.99

6 11 1.7e-05 0.0011 19.1 0.5 2 23 522 544 522 544 0.92

7 11 5.2e-05 0.0035 17.6 0.2 1 23 550 572 550 572 0.96

8 11 0.00029 0.02 15.2 0.7 1 23 578 600 578 600 0.97

9 11 0.00051 0.034 14.4 1.4 1 23 605 627 605 627 0.98

10 11 6.2e-06 0.00042 20.5 1.4 1 23 633 655 633 655 0.97

11 11 0.0059 0.4 11.1 3.4 1 23 661 684 661 684 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.6e-06	0.00045	20.4	0.6	1	23	274	297	274	297	0.95
2	11	0.0008	0.054	13.8	3.3	3	23	309	329	308	329	0.98
3	11	1.7e-05	0.0011	19.1	1.5	2	23	339	361	339	361	0.91
4	11	2.7e-05	0.0018	18.5	0.5	1	23	457	480	457	480	0.95
5	11	4.6e-06	0.00031	20.9	1.0	3	23	492	512	491	512	0.99
6	11	1.7e-05	0.0011	19.1	0.5	2	23	522	544	522	544	0.92
7	11	5.2e-05	0.0035	17.6	0.2	1	23	550	572	550	572	0.96
8	11	0.00029	0.02	15.2	0.7	1	23	578	600	578	600	0.97
9	11	0.00051	0.034	14.4	1.4	1	23	605	627	605	627	0.98
10	11	6.2e-06	0.00042	20.5	1.4	1	23	633	655	633	655	0.97
11	11	0.0059	0.4	11.1	3.4	1	23	661	684	661	684	0.98

Sequence Information

Coding Sequence: aTGTCGAGTATTCCTGCAGAAAAGGAAGCCACCCATGAAGATCCAGCAATTTGGCACCGTTGGTGTCGCCTGTGTGCCCAAAATCATCTGACCAACCGGAATGTGTACTCCAGGGAGGAGCATCAGAACTCGGGGACGAGCATGTTGGCCATGACCATTGGCAAATACTTCTGGGTGGATATCAAAAAGGAGGATGAACTGAGCAATTATCTGTGTTCCGAATGCTTCACTTTGATGGATTGCCTCATGGAATTCTCGGAGAGAGTTCGCAAAGTGCAGACCCTTTTCAACAGATTGCAGGCCCTAAAACCGGATACTTCGGTAAACTATGAGGAACTACGAGCAGACTGCGGATTGGCCACCGATGAATGGAAGCATATTATGTACAGAGCAGTGGTACTTCCTCCCCCGAAAGAAGAAGAGTTCATTGATGAGGACCATCCAATAGTCGTGGAAGAACTGAAAACCCAAGAATTTGTCCAGGAGCTGCATATCGCTGGAGATGAATTACAAATCGTTGGAATGGAAGACGGAGGTGAGCACCTCGTGGAGGAAGAGGTCGAAAcagtggaggaggaggtgcagCAACAGGAACCCACCGATTGCTTGGTAGAAGTGGATCGCAGCGCAGAGGATGAGGACTACATCGAAGCATCGAAGATAATAGTAGAAAGCCAAGTTGAAGATTTCCACGTTGAAACATATGAAGTAATATCCCAAGCACGCCCAGAAGAACTCCTTAAATCAAAAGCTATAGAGGAAACTATAGAATCCGAGGAAGATACCCATGAAGATGCACTTTCCGTGGAGCCAACCAACTATAAATGCAGCATTTGTAATAAGTCGTACATAAAACCCACCGCCTACAAGCGACACATGGAGGAAGTCCACAACACTGTGCCCAAAGATCTACCACAACTGCTATGCAACCGGTGCGGATTATGCTTTCCCACAGCCACCCAGCTAGCCTCCCACTACTGCACCCATTTACCCGCCAAAATGAAGTCGGATAACTCCTGTCCGAACTGCGAAAAGCATTTTACCACTTCGGCATCCCTTAAACGACATATAGATGGGTTTCACAAGCAGATCAAGCCTTACGTCGGCGAAACCTCAGATGGCCTTGTTGAAGTGGAAAACATCCCGGAAGAGGACTACATCGAAGAATCGCAGATAATAGAAGAAAGCCAAGTGGAAGATTTCCAGATTGAAACATATGAAGTAATATCCCAAGCACGCCCAGAAGAACTCCTTAAATCGAAAGCAGTCGAAGAAACTATAGAGTCCGAGGACGATACCCATGAGGATCTTTTATCTGAGCATCTCATAGAAGATGAAGATGACGAGATTCCAGAAGATCCAACCATCTACAAATGCAGCATTTGCAATAAGCCTTACAAGTTACCCAAGGCCTATAAGCGACACATGGAAGAGGTCCACAACACCGTGCCCAAAGATCTACCACAGCTGTTATGCAACCAATGCGGACTATGCTTTCCCTCGGCCTCCCAGCTGAACGCCCACTACCGAAGCCATTTACCCGCCATAACTAAGTCCGATAACTCCTGTCCGCACTGCGATAAGCGTTTGACCACACCGGGAACACTGAAGCGACATATAGAGGGGGTTCACAAGCAGATCAAGCCCTATGTTTGCGACATCTGCGGCAAGAGCTTCAACTATGTCACCGGGCTCAAAGACCACAAGGTGGTCCACACCGAGGAGTGTCCCTTCGAGTGTCCCGTGTGCTTGCGACGCTTTAAAAACAAGGCTAGATTAAAGATCCATTCTGATACTCACAGTGCCCAAATCTACGAGTGTACTATATGCGGCGTGAAGCTCAAGACCCGTCGCACCTTCAACAAGCACAAATTGGTCCATTCAGATGAACGGCAATACAAGTGTGATGTCTGTGGATCAACGTTCAAGCGGAGCAAGACCCTAAAGACGCATCTCATCCTGCACACTGGCATTCGGCCGTACAAGTGCAACTTCTGCGGAATAGACTTCTCCAACGGCTCCAATTGTCGATCTCACAAGCGAAAGGCGCATCCCAAGGAACTGGCCGAGGAGGAATCGCGCGGTGTCTCGCGGTCCACACTACTTCCCATGCTAGATGAGCTTACCAAGGCATCCAAGCTCATAAAAACACCCGCAAAGCCCAGCAAAAACAAGGGAAGTAGGCCAAAAGTTCCGCCCAAAGCTGAATCTTCCTCAAAGGACACTGATGGAAATGCTATCCTTTACGAACTTGTCGAGGAGCTTGAATACTCCTag
Protein Sequence: MSSIPAEKEATHEDPAIWHRWCRLCAQNHLTNRNVYSREEHQNSGTSMLAMTIGKYFWVDIKKEDELSNYLCSECFTLMDCLMEFSERVRKVQTLFNRLQALKPDTSVNYEELRADCGLATDEWKHIMYRAVVLPPPKEEEFIDEDHPIVVEELKTQEFVQELHIAGDELQIVGMEDGGEHLVEEEVETVEEEVQQQEPTDCLVEVDRSAEDEDYIEASKIIVESQVEDFHVETYEVISQARPEELLKSKAIEETIESEEDTHEDALSVEPTNYKCSICNKSYIKPTAYKRHMEEVHNTVPKDLPQLLCNRCGLCFPTATQLASHYCTHLPAKMKSDNSCPNCEKHFTTSASLKRHIDGFHKQIKPYVGETSDGLVEVENIPEEDYIEESQIIEESQVEDFQIETYEVISQARPEELLKSKAVEETIESEDDTHEDLLSEHLIEDEDDEIPEDPTIYKCSICNKPYKLPKAYKRHMEEVHNTVPKDLPQLLCNQCGLCFPSASQLNAHYRSHLPAITKSDNSCPHCDKRLTTPGTLKRHIEGVHKQIKPYVCDICGKSFNYVTGLKDHKVVHTEECPFECPVCLRRFKNKARLKIHSDTHSAQIYECTICGVKLKTRRTFNKHKLVHSDERQYKCDVCGSTFKRSKTLKTHLILHTGIRPYKCNFCGIDFSNGSNCRSHKRKAHPKELAEEESRGVSRSTLLPMLDELTKASKLIKTPAKPSKNKGSRPKVPPKAESSSKDTDGNAILYELVEELEYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00602762;
90% Identity: iTF_00602762; iTF_00604991;
80% Identity: -