Dsuz001718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila suzukii
Gene Symbol
-
Assembly
GCA_013340165.1
Location
WWNF01000001.1:3440210-3447068[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.6e-05 0.0011 19.1 2.1 1 23 221 243 221 243 0.97
2 17 5.4e-06 0.00037 20.7 0.4 1 23 249 271 249 271 0.97
3 17 0.00079 0.054 13.8 0.9 1 23 277 299 277 299 0.95
4 17 1.1e-05 0.00077 19.6 3.1 1 23 305 327 305 327 0.97
5 17 2.6e-05 0.0018 18.5 4.7 1 23 333 355 333 355 0.99
6 17 4.7e-05 0.0032 17.7 5.7 1 23 361 383 361 383 0.97
7 17 2.3e-07 1.6e-05 25.0 4.3 1 23 389 411 389 411 0.98
8 17 8.3e-08 5.6e-06 26.4 2.4 1 23 417 439 417 439 0.97
9 17 4.9e-05 0.0033 17.7 6.7 1 23 445 467 445 467 0.97
10 17 8.4e-05 0.0057 16.9 6.5 1 23 473 495 473 495 0.98
11 17 5.5e-06 0.00037 20.6 8.1 1 23 501 523 501 523 0.98
12 17 4.4e-06 0.0003 20.9 7.6 1 23 529 551 529 551 0.97
13 17 5e-07 3.4e-05 23.9 7.7 1 23 557 579 557 579 0.98
14 17 0.00016 0.011 16.1 9.5 1 23 585 608 585 608 0.95
15 17 5.5e-05 0.0037 17.5 0.9 1 23 614 636 614 636 0.98
16 17 0.0006 0.041 14.2 3.4 1 23 646 668 646 668 0.97
17 17 6.9e-06 0.00047 20.3 1.6 1 23 674 697 674 697 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCTAGCTCGGTGCCATCAGTAGTAGCCCCTGTTGTGACCACTGGTGGGACGACGATCACCTTGGGCGGCCCACCGCCGCTCCCCAAATCGGAGCACAAAGAGGATGGCAAGCCACCGCACGGCATCGAGATGTACAAGGTGAACATCGAGGACATTTCGCAGCTCTTTACCTACCACGAGGTCTTTGGCAAGATCCACGGCGATGTGGTCAATCATCAATTGGCGGCGGCCCACGGGGGTCAGTTGCCACCACctccgccgctgccgccgcagGTCACCAGCCATGCGGCGAGTGCAGCGGCAGCCGCAGCAGCGGCGTCTACCAACAATGCCGCCGTGGCAGCGGTAATGGCCTCGGCGAATGCAGCAGCGGCCGCGGCGGCGGCTGCATCGGCGGGGGGAGGACTACCGCCGGCCACCAGCGGCAATGGGGGCCAGCAGGTGACGGTGACGACGACCAGCAGCTCGACGAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATTCATGGCGTGGACGGCAGCGGCAATGGCGGCAATGGCGGCGGGCAGAACGTGGCGCTGGCGCCGGACGGTACGCCCATTGCGACGGGGACGCACGTCTGCGACATCTGCGGCAAGATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGCGAACGGAAGCCGTTCATGTGCCAGGTGTGCGGCCAGGGGTTCACCACATCGCAGGATTTGACGCGCCACGGCAAGATCCACATTGGCGGGCCCATGTTCACCTGCATCGTGTGCTTCAATGTGTTCGCGAACAATACGAGCCTGGAGCGGCACATGAAACGGCACTCGACGGACAAACCGTTCGCCTGCACCATTTGCCAAAAGACCTTTGCCCGCAAAGAGCACCTGGACAATCACTTCCGCTCGCACACGGGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACGCCGCACCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGATCGCACACCAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAACCACATACTCTGGCATACAGGCGAGACGCCGCACCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCACTTGCTCAACCACGTGCGCCAGCACACGGGAGAGTCGCCGCACCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCACCTGGTCAACCACATACGCCAGCACACGGGCGAGTCGCCGCACAAGTGCACGTACTGCACTAAGACGTTCACGCGCAAGGAGCACCTGACGAACCATGTGCGCCAGCACACGGGCGACTCCCCGCACCGATGCTCCTACTGCAAGAAGACGTTTACGCGGAAGGAGCACCTGACGAACCATGTGCGCCTGCACACGGGCGACTCGCCGCACAAATGCGAGTACTGCCAGAAGACGTTCACGCGGAAGGAGCACCTCAACAATCACATGCGCCAGCACTCGAGCGACAATCCGCATTGCTGCAACGTTTGCAACAAGCCGTTCACGCGCAAGGAGCACCTGATCAACCACATGTCGCGGTGCCACACCGGCGACCGGCCCTTCACCTGCGAGACGTGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTCTTCCATCAGCGCAGCCACACCAAGGGCCAGGAGATGGAGCGACCCTTTGCCTGCGAGAAGTGCCCCAAGAACTTCATCTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAACCACACGCGTGCACTCTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCACTCGGCGACCACCACGATGCACACCATTCAGCAGATCACGGCGGGAGCGGCGGGTGGAGCCGGAGCAGTACAGCTAACCCCGGGCCTGGTGCCCCTGCTGCAGCATCTGCCGGCGAATGTGGAACAGCACCCGGTTGTTTACTAA
Protein Sequence
MQHVSAASSVPSVVAPVVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQVTSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAGGGLPPATSGNGGQQVTVTTTSSSTSSGGSTTSGGTTTTAGELLMPKMEGGIHGVDGSGNGGNGGGQNVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00505532;
90% Identity
iTF_00507738;
80% Identity
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