Dsuz008950.1
Basic Information
- Insect
- Drosophila suzukii
- Gene Symbol
- lolal_1
- Assembly
- GCA_013340165.1
- Location
- WWNF01000003.1:6949083-7009855[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-12 2e-08 33.7 0.0 1 40 743 783 743 786 0.90 2 4 4.8e-14 1.1e-10 40.9 0.1 2 39 798 835 797 838 0.94 3 4 1.1e-17 2.6e-14 52.5 0.0 1 45 852 897 852 897 0.98 4 4 1.1e-19 2.6e-16 58.9 0.0 1 43 904 947 904 948 0.97
Sequence Information
- Coding Sequence
- atggcAGCGGTACGAGGACATCAGTATTTCAGCCTGCGCTGGAATAACTATCAGAATACGATGACGTCAGTGTTCCAGCAGCTGCGCGAGGATCTGTCCTTTGTGGACGTAACCCTATCCTGCGAACACGGATCCCTGAAGGCGCACAAGgttgTCTTGTCGGCCTGCTCGACGTATTTCCAAAAACTACTCCTCGAGAACCCATGCAAACATCCCACCATCATCCTGCCCGCCGACATCATCTTCACCGACCTGAAAACCAtcattgattttgtttatcgTGGGGAAATCGACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTAAAGATCAAAGGCCTCTGCGAAACCGCCGAGAATGCGGATGACCTGAACGACGCTGCCACAGCAACGATCACAGTTTCGGAGAACATTCAGCAGGCGGTCGTTGGTAATATCGTAAACGCCACCATAGTTCCGGGAGCACCATCGCCCTCCTtggaacagcagcagcagcagcaacaccaccagcaacagcaggcacaggagcagcatcagcagcagcaacagcagcaggtgcatgcccagcagcaacagcagcagcaacaaatcCACGCTGCCCTGCTGACGCAACACGGAGTGGCCAGCGGAAGTGTTTCCCTGTCCGGTCAATTGCTTAGCTCCTCGGCCAGCGGCAGCAGCGGAAGTTCAGCCGGCGGACAGCAGGCTCCACAGACGCCAACATCCGGTTTGCAGCCGACGCCGCGCAAGcctcgactaaagcgttccAAATCCCCGGATCTGCCATCgggcggaggaggagcaggaagCTCTGGTGGTGGCTCAAGTAGCAGCTcatcgcagcagcagcaaccgcaACCGgcgcaccaccaccagcaccacccgCAGACAATCCTGATCCAGGGCCAAAATCCGAACTCTATTGTGAGCCTTCAGCAGACGGCCGACGGCAATTATATACCAGTGTCGGCCAGTGGCGACGATTCCGACGTCGAGGATCACGACCACGATCACGAGCACGAACACGGCCACGGAGGACATCAGCACGGAGGACACGGTCACGGCCACGATCACGAGCACGATCACGAGCACAGTCACGACCACGATCACGAGAGTAAGCCGAATAAGATCTGCAAGACCGAGCAGTCGGTGGCCTCGCCGGCGTCCAATTCATCCAGCGGCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACATCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATCTGGCTCAGCAGATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCTCATCACCATACCGGCGATGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTTATCGAGGCAAAGCACCTGGCGGCTGCCCAGCAGCATGCACTtagccagcagcaacatgcccATCACCAGgcccaccagcaacagcagcagcagcagcaacaccaacagcatcagcagcaacagcagcagcaacaacagcagcaacatcaacatctCCATGCACAGCAACTGTTGGCCCAGAgtcagttgcagcagcaacagcagcagcaacaccatcagcagcaacaacaggcagccgcagcggcagcagcagcagctggagtGCATGGCCAGCATGGGGGACATGTGACGCATGCCGATATCGGCGGTGCCACAGTCATGGAGATTGATCCGAGCCAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGGCATATGGACATGTACAACTCGGACACGAGCGAGGATTCGATGATGATCGCCAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGTATGGGTGGCAGCGTTTGCGGCCCGGGGCCGGgaggtgctggtggtggtgggggcATGAGTGGTGGGGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCATCAAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATTGCCCGGCGCGAGGGCATCCGCCTTGCGGCGCCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAGGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAATACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACTGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGttGCATATGTTACAGCAACAGTTCCCGTACAGCCCATCGCCGCATCCGCCAACGCCGCAGCACCACAGCACGCCGCAGCATCACAGTACGCCGCAGCAGGGGCCGCCTACGCCCCAGCACATGCAGCAGCACGTAGTACacatgcaacagcaacagcagcagcagcagtcgccCCATCCGGGCCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGCAGTCAGGTGGTGCAcagccaacagcagcagcagcagcaacagcagcagcttcaGCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQHHQQQQAQEQHQQQQQQQVHAQQQQQQQQIHAALLTQHGVASGSVSLSGQLLSSSASGSSGSSAGGQQAPQTPTSGLQPTPRKPRLKRSKSPDLPSGGGGAGSSGGGSSSSSSQQQQPQPAHHHQHHPQTILIQGQNPNSIVSLQQTADGNYIPVSASGDDSDVEDHDHDHEHEHGHGGHQHGGHGHGHDHEHDHEHSHDHDHESKPNKICKTEQSVASPASNSSSGSNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAQQHALSQQQHAHHQAHQQQQQQQQHQQHQQQQQQQQQQQHQHLHAQQLLAQSQLQQQQQQQHHQQQQQAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGMGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQQGPPTPQHMQQHVVHMQQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00578452;
- 80% Identity
- iTF_00604931;