Basic Information

Insect: Drosophila subpulchrella
Gene Symbol: lolal
Assembly: GCA_014743375.2
Location: NC:9601257-9662310[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.4e-09 8.8e-06 25.1 0.0 16 40 741 767 737 770 0.84

2 4 6.1e-14 9.9e-11 40.9 0.1 2 39 782 819 781 822 0.94

3 4 1.4e-17 2.3e-14 52.5 0.0 1 45 836 881 836 881 0.98

4 4 1.4e-19 2.3e-16 58.9 0.0 1 43 888 931 888 932 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.4e-09	8.8e-06	25.1	0.0	16	40	741	767	737	770	0.84
2	4	6.1e-14	9.9e-11	40.9	0.1	2	39	782	819	781	822	0.94
3	4	1.4e-17	2.3e-14	52.5	0.0	1	45	836	881	836	881	0.98
4	4	1.4e-19	2.3e-16	58.9	0.0	1	43	888	931	888	932	0.97

Sequence Information

Coding Sequence: aTGGCAGCGGTACGAGGACATCAGTATTTCAGCCTGCGCTGGAATAACTATCAGAATACGATGACGTCAGTGTTCCAGCAGCTGCGCGAGGATCTGTCCTTTGTGGACGTAACCCTATCCTGCGAACACGGATCCCTCAAGGCGCACAAGgttgtCTTGTCCGCCTGCTCGACGTATTTCCAAAAACTACTCCTCGAGAACCCTTGCAAACATCCCACCATCATCCTGCCCGCCGACATCATCTTCACCGACCTGAAAACCATCATTGATTTTGTTTATCGTGGGGAAATCGACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTAAAGATCAAAGGTCTCTGCGAAACCGCCGAGAATGCGGATGACCTGAACGACGCGGCCACAGCAACGATCACAGTTTCTGAGAACATTCAGCAGGCGGTCGTTGGTAATATCGTAAACGCCACCATAGTTCCGGGAGCTCCATCGCCCTCCTtggaacagcagcagcagcagcaacaccaccagcaacagcaggcACAggagcagcatcagcagcagcaacagcagcagcaggtgcatgcccagcagcaacagcagcagcagcaacaaatcCACGCTGCCCTGCTGACGCAACACGGAGTGGCCAGCGGAAGTGTATCCCTGTCCGGGCAATTGCTTAGCTCCTCGGCCAGCGGCAGCAGCGGAAGTTCAGCCGGCGGACAGCAGGCTCCACAGACGCCAACATCCGGTTTGCAGCCCACGCCGCGCAAGTCTCGACTAAAGCGCTCCAAATCTCCGGATCTGCCACCGggcggaggaggagcaggaagCTCTGGTGGTGGCTCAAGTAGCAGCTcatcgcagcagcagcaaccgcAGCCGGcgcaccaccaccagcaccacccGCAGACCATCCTGATCCAGGGCCAGAATCCCAACTCTATTGTGAGCCTTCAGCAGACGGCCGACGGCAATTATATACCAGTGTCGGCAACTGGCGACGATTCCGACGTCGAGGATCACGACCACGATCACGAGCACGAACACGGCCACGGAGGACATCAGCACGGAGGACACGGTCACGGCCACGATCACGAGCACGATCACGATCACGAGCACAGTCACGACCACGACCACGAGAGTAAGCCGAATAAGATCTGCAAGACCGAGCAGTCGGTGGCCTCGCCGGCGTCCAATTCATCCAGCGGCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACCTCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATCTGGCTCAGCAGATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCGCATCACCATACCGGCGATGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATCGAGGCAAAGCACCTGGCGGCTGCCCAGCAGCATGCACTtagccagcagcaacatgccCATCACCAGgcccaccagcaacagcagcagcagcagcaacaccaacagcatcagcagcaacagcagcagcaacaacagcagcaacatcaacatctCCATGCACAGCAGCTGTTGGCCCAGAGTcagttgcagcagcaacagcagcagcaacaccaccagcagcaacaacaggcagccgcagcagcagcagctggtgTGCATGGCCAGCATGGGGGACATGTGACGCATGCCGATATCGGCGGTGCCACAGTCATGGAGATTGATCCGAGTCAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCGGGGCATATGGACATGTACAACTCGGACACGAGCGAGGATTCGATGATGATCGCCAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGTATGGGTGGCAGCGTTTGCGGCCCGGGGCCGGGaggtgctggtggtggtgggggCATGAGTGGTGGGGCTGGCTCTGGCTCTGGCGAGAAAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGCTACGTTCGGGTCAGATATCCGCGAACAAAGCATCAAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATTGCCCGGCGCGAGGGCATCCGCCTTGCGGCGCCGTTCAATGCCGCCCCAACCACATGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACTTCGGTGCAGAAGGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAATACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACTGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCATATGTTACAGCAACAGTTCCCGTACAGCCCGTCGCCGCATCCGCCAACGCCGCAGCACCACAGCACGCCGCAGCATCACAGTACGCCGCAGCAGGGGCCGCCGACGCCCCAGCACATGCAGCAGCACGTAGTACAcatgcaacagcaacagcaacagcagcagcagcagtcgcCCCATCCGGGCCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGCAGTCAGGTGGTGCacagccagcagcagcagcagcaacagcagcagcttcAGCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQHHQQQQAQEQHQQQQQQQQVHAQQQQQQQQQIHAALLTQHGVASGSVSLSGQLLSSSASGSSGSSAGGQQAPQTPTSGLQPTPRKSRLKRSKSPDLPPGGGGAGSSGGGSSSSSSQQQQPQPAHHHQHHPQTILIQGQNPNSIVSLQQTADGNYIPVSATGDDSDVEDHDHDHEHEHGHGGHQHGGHGHGHDHEHDHDHEHSHDHDHESKPNKICKTEQSVASPASNSSSGSNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAQQHALSQQQHAHHQAHQQQQQQQQHQQHQQQQQQQQQQQHQHLHAQQLLAQSQLQQQQQQQHHQQQQQAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGMGGSVCGPGPGGAGGGGGMSGGAGSGSGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQQGPPTPQHMQQHVVHMQQQQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00619072;
90% Identity: iTF_00578452;
80% Identity: iTF_00602681;