Dsub018244.1
Basic Information
- Insect
- Drosophila suboccidentalis
- Gene Symbol
- -
- Assembly
- GCA_037043435.1
- Location
- JBAMBK010002607.1:88395-94547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.056 4.1 8.3 0.2 1 23 1343 1366 1343 1366 0.94 2 13 9 6.6e+02 1.4 0.2 1 23 1552 1574 1552 1574 0.91 3 13 0.0002 0.015 16.0 2.7 2 23 1577 1598 1577 1598 0.97 4 13 7.8e-05 0.0057 17.3 0.2 3 23 1606 1626 1604 1626 0.98 5 13 6.5e-07 4.7e-05 23.8 4.1 2 23 1633 1654 1632 1654 0.97 6 13 6.1 4.5e+02 1.9 0.4 5 23 1667 1685 1665 1685 0.96 7 13 1.5 1.1e+02 3.8 5.4 3 23 1692 1713 1690 1713 0.93 8 13 0.16 12 6.9 0.2 2 23 1724 1744 1723 1744 0.96 9 13 2e-05 0.0015 19.1 0.6 1 19 1750 1768 1750 1772 0.95 10 13 1.8e-05 0.0013 19.3 0.5 1 23 1780 1802 1780 1802 0.98 11 13 0.00012 0.0085 16.7 7.6 1 23 1808 1830 1808 1831 0.96 12 13 0.00023 0.016 15.8 5.9 1 23 1836 1858 1836 1858 0.98 13 13 0.032 2.3 9.1 8.2 1 23 1864 1886 1864 1887 0.95
Sequence Information
- Coding Sequence
- ATGGTTGACAGTGTGCAGTGTCCCGTGTGCACCTTGTACCTGCATGCGGGGATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAAGTCATCAAAGCCCTGGTGCAAATGACAATCGTCGGCAATAATGCAATGGGCGGCGCCCTGGCGGCAGCTGCGCCCTCCACTGTCGGCAGAGGTGCATCATCAGATggcgcctcctcctcctcatcacCGCCAGATGCTGATGTGAAACCAGCTGTGGCAGCAATAGCACCACCAGCtgaagcggcagcagcaacggcagcagcaccagcaccaccaccaccaccaaaaacaacgacagcaacaccagcaacaacaacaacaacaacaacattaaagtCAACAGCACCCAAATCTGCATCGTTGCTGTTAAATTCAAGTatcaacaacaccagcagcaacagttgctgtaacagtaatagcaacagcaacattaacagtaatagcaacagcaacaataataacaaatcgAGCAATCCACCGATTAAGGCAGTTAAAAGCGCGCCACCCTCGACTGAGGCGTCAGCCACCACATCCACCACACCCACCATAAGCAGCGTGTCCGCTGCCTATCCGCCATCGCTGACATCCGACTATCGCTacgatcagcagcagcaacagcagcaacaacaacagcagcagacgACGCCAACGGCAACGATTCATGGCTTTCCACGCGGTGCTACCACAATGCTGGTAATACCACATGCAccacagcatcagcagcagcatcatttCCTGGCCACTCAACAGCCTGGTCATTTTGcccatcagcaacagcagcagcagcaacaacagtcggCTATGAAGTACACGTATGCAACAACGTTGCCTCCGCCACCGCCGCCTCTGCAGCTGTTTGCACAGCAGCCGACAACGGCGCAGTCGCATCAGAAGCCACCGCCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACAAGCAAcatcaacaccaacaacaacaacatcatgtAACCGTACAACATAACGTTAACCTAGCACCACCGAGTGGGAAGCATAGTAAAGCCCATACGGAGATCTTTCTGAATCCACCGCCCCCACCACCGCCACAGACCACGATGCCGTCTTCGTCAACGTCCTCGTCCGccgcagccgccgccgcctcctccTCAAGACTgcaacatccacatccacaacaGCACCAGCAATCCCTTGCAGCTGGCGGCAACAACTATGCGGGAGCCAACTGCTCCACCTCCACGTCGAGTCTGATGTCAGCGACCACCAACGGACGGGGCAGCAGTCGCCAGTCGACCAATTCGCCATTCGGTGCACTGCTTAGTGCGGCGACGCAAGCTGCCAGCTCCTCGTCCGCCTCCTCCAGCGCATCTGTGCTGCGTTTCGCCGAATCGCCGGTTGCCCACTATCTGGAGCGGGACAATGGTGACTTTATTGTCCAAGAGACGCCCAAACACATTGTCGAATGCGTCGAGAAGGATGATGGCGAATTCTCAGTGATTGAGCGCATCTATCAGTCGCCACCCAGCGTGTTGCACAtccacgacgacgacgaagaagAGGAGGAACAGAGCTGGGCAAACAGCGACGATGAGGATCACACCAAGGCACATAACCATGTGGAGGATGGCGATGATGAGCGCGAGGACAGTCGCAGCAGAGTCGGCCTAAAGACGACAACGAAAAAGTCGCGTAAAATCAAATCGAGTGGGAGAATGCACAAACGTGCATCGTCCAAGCATCGGATGGTTTCTACGGAGGATGAGGAAGAGTTCATGAGTGTGGGCAGCAGTGAAAACGAGGAACAGGCAGAGGAGCAACCGCAGTCGTCTGGTGGTGCAAGTGCACCGGTGACATCGCCGTCGTCGCCGCAGCTTTGCACGGCGCCGTCAACGAGCAGTGGAGCGGCTGCAGCAGTTTCTGGCAGTGTCAATTCCACGTCCAGCGGTACCATAAAGTCCAAAAAGAATCGTGTTACAGTGTTGAGCGATGTGCCGCTGAATATGAATGAGTATCTGGATTTAGTGGGCAATATTGTGGCATCGAGTCGCATTGGTGCAGCTCGTCCGTTTGCCGCTGTGGCGCCCATTCCGTTGGTCAAGGTGGAAAAGGAGGAGCCACTGGACGAATACGACAGCGTTCAAACCGAGATTCAATCCATGGAGCACAAGCCGAGCGTGGAAAATGCcagtagcaacagcagcagcaatggaCACGGCACCACCAGCGTCATACGCATGGCCAGCACTAGCAGCAGCACCAATGTTCCGTCTGAGGATCTCACACAGCCGCCAGCCATGAAAGTCGAGGTGGAGCCAACAGTGCTGCTGCCACAACGCTTCTCAGCGCCGGCGCAGCAGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGCCACagcaacggcgacggcgacggcaacgacgacgacgacgaaaaAGACTGATAACAATGCTGCCAGCAGTAGAAACAGCAACTGCTCCGAATCTCCCAGCATATCAAAAGCGTCTGCAGATCTGGTGCAGATCAAGAGCGAGAATGTAGAACCATCCACCTCGAGTGGCAGCATCCTAGAGAAGCATCTAACCACCAGCTACACTGGGCAAGAAGCGCGCAAGCATTCAACTGTCAATGACGACGATGCCCGTGTCCTGTTGGAATTTGCCAACTCGAAGCAGCTACCGCTGGCAGGCAGCAGCAATCCCACGACATTTGTGGTGAATGCGGCCAGTTTTGCATCGGCGGGATCGGTGTTCGCCAACAGCATTCAGAATCAGCCAATAGGGCCGGGCGAAGAGTACATTCTGCCTGATGATAACAACGTGGAAATGGATGAAATTGTGATATCCTCCTCGTCTTCCTTTGCCTCCGCCACGCAGCAAGcgcatcagcagcatcagcaacagccgCATCAGCATCCACAGACAACTCCTCCGGCTGTTCAAGCTACTTTGCAGCAGCATGTGCAGCCGCCTACCTTTAATGACTTTAACTTTCTGTACCACCAAAATACACCAACATCAACGACAACGACTGCTTCCAATTTTGCACCATTCGGtcttcagcagcagcagcagcaacatcagcagcagcaacaacaacacggaTCAAGTGAAGCCACGAATGCAGCGACGCTTGCCTCGTCCTCCAGTAACTCGTCAGCCTTGGATCACGAGTCCTCCATGAATGCAACGTTCCGTGTGGCCAAGACACAGTCATCTCCGAGTGCGTGGTATCAgccccaacagcagcagcagcaacaacagcagcagcagcaacaacagcagcagcagcagtcacaACCGAACAGCACTCACAATGTGGAACAGTCGAGTAATTTTATTGCAGCCTTGGCAGCCGTCGAATGTTGCAGTGTGGCGATGGACAGTGATGCGAGTGATGCCAAGTACTTGGATCTGGATGCATGTAAGCGGGAACAGTTGAGCAATAGCAGCAGCCACTTGCCCTCTGCCTCGGCTTCCAGGTCCACAACGTCGTCgtcatttgctgctgctgccacggAGAGCAGTCTCGTTGGTGGCCTGGGATTGAATATTCGCACTGATGAGAAGATGCCCGCGAAGGGTGAAATTTCCGAGCAGGAGAGCAACTGCGACATTGAGAACTCCTGGAGTCAGTCGATGTATGGGGACATATCACAGCGGTACTTTAGAAACCAATTCGCGGACGGCTACAATCAGCAGCTGACCGATTGGCGTCAGGACTATTATCCTGCGCAGGATCTCAGTGGTCAGCCGGAGCACCGTGAGCACAAACGATTTGACTTCAATGCGGTCGCGTCTGATTACGCGCAGCCGGGTGAGCAGGACGCCTCCTCGAGCTCCGCCAGAAGCAATCAATTGCTGGATGTGCAGCCCACCACGTCCACGTCGTCATTGGCTTTGCTGGCTGGCCCACCAATAGCCTCGACGTCCCGAGCTGCCGCCGAAGCGGAGGCCGTTGCCGCCGCGTTGCAACGGAAGCCCGCGCGTCGCAAGATCTACAAGTGTCCACACTGCGTGGCCATTTTCGAGAAGCTTAAGGAGCGCAATGCACACATGATTGGAGAGCACAACTATGTGCGCCAAAATCGGCGACTCATTTGTACGCAGGCGGTGGTCAATGCAGCCTTGCTACAACAGCCGCAGGTTCAACAACAGCCGCAGgttcaacaacagcagcaggtgcagcaacagcagcaggagcagcaacagcagcaggagcagcaacagcagcagcagcaacagttgttgctgcaggcAGGTGGAACCATGAGCGATGCCTTGCAGGAAGACTCCAAGGATGGCATTGTCAAGATCAAACAGGAGCACTGCCAGGACAAGCCCGATTCATCCGAGCAGCTGCTTGATCAGTTGGAGTTGCCGGATGTGAAAGATGCAGGCTTATTAGATGTGAACGGTGAGAATGAACGTGATGCTGCAGACGTAAAGCCCGCTACCAACGTGACTGATCTAAAGCCGCCGGCTATTACGCCTTTGGCTATGACAACACCTGCTGCCAAATTGGCAGCGATTTATCGCATGCTCATTGCCTATAACGAGTCGAAGCTGGGACAGGATCATCACAACCTCAACGAGCTGGAGCAAAAGGCGATGGAGAAATCCATATTTCTGTGCTACGTCTGTCGCACCGATTTCCCCTCTGTGAAACTGTACGATGCACATCTGACTGAACATCCCGCCGAGTGCTTCACCTGTGGCAAGAAGTTTTATCGCTGGAAAAACTTTTCACTGCATCTGAAACGTCATCTTGGCTGGAAGGAATTCGGTTGCTATGTCTGCGATAAGAAATTCGTTGTGCGCAGTGCCCTCGTCGAGCATATGCGGATGCACACTGGCCAAACTCCGTTGAAGTGCAAAATATGCGGCAAAAAGTTCAAGCGTTACTCCAACTTGACTCAGCATCGGAAGCGCCACTTTAAAATTACGGTGCGGAAGAAGGAATATGTGTGTCACTGCGGCGAGGTGTTGCCCTCAAAGGCGCGGTTCCTCTGGCATAAGGAAACGCACGATTTGAAGCCAAAGTGCTGTCCATACTGCTGCGATCGTTTTGTCCACGCCAATTCACTGCGACGACACATACGGCTGGCGCATTCGGACAAATTTGACTATGCTGAGCCCATGGAATGTCCCATGTGCAAGCAGATCTTTGCCAAAACGTCCATCAAGGCACACATGGCCACGCACTCGACGGATCCCCAATATGATTGCACCATCTGCAACAAGAGCTTCTCTACAAAATGGAATCTCAAGATACATTCGTGGGTGCATGCGAATCGCACAGCCAAGCCGTTCAAGTGCGAGTATTGCCCCAAGGCCTTTGTCCGCGAGCTGGACTTCAAGAACCACATGAATGCACACAAGCAGATTAAGCCGTATACCTGCGAGTACTGCGGTTGCAAGTTCATACGCAAGTACAACTACATGCGGCATCGGCGAGAGCATCATGGCAACAAAAAGTTCACCTGCGATCAGTGCGACAAATCGTTTCATCGACACTACTATCTGATTGAGCATCGGCGCATTCACACTGGGGAACGGCCCTTCCACTGCACCATCTGCGGCAAGAGCTCGACCACGAAGACCAACCACAACAAGCATCTGAAGATCCATCATTCGCGTGATCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNAMGGALAAAAPSTVGRGASSDGASSSSSPPDADVKPAVAAIAPPAEAAAATAAAPAPPPPPKTTTATPATTTTTTTLKSTAPKSASLLLNSSINNTSSNSCCNSNSNSNINSNSNSNNNNKSSNPPIKAVKSAPPSTEASATTSTTPTISSVSAAYPPSLTSDYRYDQQQQQQQQQQQQTTPTATIHGFPRGATTMLVIPHAPQHQQQHHFLATQQPGHFAHQQQQQQQQQSAMKYTYATTLPPPPPPLQLFAQQPTTAQSHQKPPPAYGAAISQIRSQHNQNKQHQHQQQQHHVTVQHNVNLAPPSGKHSKAHTEIFLNPPPPPPPQTTMPSSSTSSSAAAAAASSSRLQHPHPQQHQQSLAAGGNNYAGANCSTSTSSLMSATTNGRGSSRQSTNSPFGALLSAATQAASSSSASSSASVLRFAESPVAHYLERDNGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDEEEEEQSWANSDDEDHTKAHNHVEDGDDEREDSRSRVGLKTTTKKSRKIKSSGRMHKRASSKHRMVSTEDEEEFMSVGSSENEEQAEEQPQSSGGASAPVTSPSSPQLCTAPSTSSGAAAAVSGSVNSTSSGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDEYDSVQTEIQSMEHKPSVENASSNSSSNGHGTTSVIRMASTSSSTNVPSEDLTQPPAMKVEVEPTVLLPQRFSAPAQQRGPKKLVIKPKATATATATATTTTTKKTDNNAASSRNSNCSESPSISKASADLVQIKSENVEPSTSSGSILEKHLTTSYTGQEARKHSTVNDDDARVLLEFANSKQLPLAGSSNPTTFVVNAASFASAGSVFANSIQNQPIGPGEEYILPDDNNVEMDEIVISSSSSFASATQQAHQQHQQQPHQHPQTTPPAVQATLQQHVQPPTFNDFNFLYHQNTPTSTTTTASNFAPFGLQQQQQQHQQQQQQHGSSEATNAATLASSSSNSSALDHESSMNATFRVAKTQSSPSAWYQPQQQQQQQQQQQQQQQQQQSQPNSTHNVEQSSNFIAALAAVECCSVAMDSDASDAKYLDLDACKREQLSNSSSHLPSASASRSTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFADGYNQQLTDWRQDYYPAQDLSGQPEHREHKRFDFNAVASDYAQPGEQDASSSSARSNQLLDVQPTTSTSSLALLAGPPIASTSRAAAEAEAVAAALQRKPARRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQAVVNAALLQQPQVQQQPQVQQQQQVQQQQQEQQQQQEQQQQQQQQLLLQAGGTMSDALQEDSKDGIVKIKQEHCQDKPDSSEQLLDQLELPDVKDAGLLDVNGENERDAADVKPATNVTDLKPPAITPLAMTTPAAKLAAIYRMLIAYNESKLGQDHHNLNELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHFKITVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCTICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00537699;
- 90% Identity
- iTF_00534036; iTF_00585400;
- 80% Identity
- -