Basic Information

Insect: Drosophila stalkeri
Gene Symbol: -
Assembly: GCA_035047405.1
Location: JAWNPR010000039.1:17444970-17452604[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.001 0.074 13.6 3.7 1 21 245 265 245 267 0.94

2 18 7.8e-06 0.00057 20.3 0.4 1 23 273 295 273 295 0.97

3 18 0.0011 0.084 13.5 0.9 1 23 301 323 301 323 0.95

4 18 1.6e-05 0.0012 19.2 3.1 1 23 329 351 329 351 0.97

5 18 3.7e-05 0.0027 18.1 4.7 1 23 357 379 357 379 0.99

6 18 6.9e-05 0.005 17.3 5.7 1 23 385 407 385 407 0.97

7 18 3.4e-07 2.5e-05 24.6 4.3 1 23 413 435 413 435 0.98

8 18 1.2e-07 8.8e-06 26.0 2.4 1 23 441 463 441 463 0.97

9 18 7e-05 0.0051 17.3 6.7 1 23 470 492 470 492 0.97

10 18 0.00012 0.0089 16.5 6.5 1 23 498 520 498 520 0.98

11 18 1.1e-05 0.0008 19.8 4.5 1 23 526 548 526 548 0.98

12 18 7.9e-06 0.00058 20.3 8.1 1 23 554 576 554 576 0.98

13 18 6.4e-06 0.00047 20.5 7.6 1 23 582 604 582 604 0.97

14 18 7.2e-07 5.3e-05 23.5 7.7 1 23 610 632 610 632 0.98

15 18 0.00022 0.016 15.7 9.5 1 23 638 661 638 661 0.95

16 18 8e-05 0.0058 17.1 0.9 1 23 667 689 667 689 0.98

17 18 0.00087 0.064 13.8 3.4 1 23 699 721 699 721 0.97

18 18 9.9e-06 0.00073 19.9 1.6 1 23 727 750 727 750 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.001	0.074	13.6	3.7	1	21	245	265	245	267	0.94
2	18	7.8e-06	0.00057	20.3	0.4	1	23	273	295	273	295	0.97
3	18	0.0011	0.084	13.5	0.9	1	23	301	323	301	323	0.95
4	18	1.6e-05	0.0012	19.2	3.1	1	23	329	351	329	351	0.97
5	18	3.7e-05	0.0027	18.1	4.7	1	23	357	379	357	379	0.99
6	18	6.9e-05	0.005	17.3	5.7	1	23	385	407	385	407	0.97
7	18	3.4e-07	2.5e-05	24.6	4.3	1	23	413	435	413	435	0.98
8	18	1.2e-07	8.8e-06	26.0	2.4	1	23	441	463	441	463	0.97
9	18	7e-05	0.0051	17.3	6.7	1	23	470	492	470	492	0.97
10	18	0.00012	0.0089	16.5	6.5	1	23	498	520	498	520	0.98
11	18	1.1e-05	0.0008	19.8	4.5	1	23	526	548	526	548	0.98
12	18	7.9e-06	0.00058	20.3	8.1	1	23	554	576	554	576	0.98
13	18	6.4e-06	0.00047	20.5	7.6	1	23	582	604	582	604	0.97
14	18	7.2e-07	5.3e-05	23.5	7.7	1	23	610	632	610	632	0.98
15	18	0.00022	0.016	15.7	9.5	1	23	638	661	638	661	0.95
16	18	8e-05	0.0058	17.1	0.9	1	23	667	689	667	689	0.98
17	18	0.00087	0.064	13.8	3.4	1	23	699	721	699	721	0.97
18	18	9.9e-06	0.00073	19.9	1.6	1	23	727	750	727	750	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCTCCTTGGGCGGACCGCCGCCATTGCCCGGCAACAAGTCAGATCATAAAGAGGACGGCAGCAAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAGTTATTTACATACCACGAGGTATTTGGCAAGATCCATGGCGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGTCAATTGCCACCGCCGCAactgccaccgccaccgccattACCACCGCAGACGACGCATTCGGCtagcgcagctgcagctgcagcggcggtGTCCACAAATAATgcagccgttgctgctgtaatGGCATCAGCCaatgcagcagccgcagctgcagcggccgCATCGGCCGCAGCCACggcccaacagcaacagcagcagcaacaacaacaacaacagcagcagcaacaacagcaacagcaagcccCAGCGACAAGCACAAATGCTGGAACTCAGCAGGGCAGCGCCACGGTGACCACAACTAGTTCCTCCGGCAGCAACGGGGGGAATgggggcaacaacaatgcgacaacaacgacgacgggTGAGTTGCTAATGCCGAAAATGGAGGGCGGCATCCATGGCGTTGATGGGCAATCGAGCGTTGCACTAGCCCCAGATGGCACGCCCATAGCGACTGGGACGCATGTGTGCGACATTTGTGGCAAGATGTTCCAATTTCGCTATCAGCTAATTGTGCACCGTCGCTGCCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTATGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCAGGCATGGCAAGATCCATATTGGCGGTCCCATGTTCACTTGCATTGTCTGCTTCAATGTGTTTGCCAATAATACGAGTCTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTTCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTCAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGTGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCATGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACGCGCAAGGAGCATTTGACGAATCATGTCCGCCAGCATACGGGCGATTCGCCGCATCGTTGCAGCTATTGCAAGAAGACCTTTACCCGCAAGGAGCATTTGACGAATCATGTGCGCCTGCACACTGGAGATTCGCCGCACAAATGCGAATACTGCCAGAAGACGTTCACGCGCAAGGAGCATCTCAATAATCATATGCGCCAGCACTCCAGCGACAATCCGCATTGTTGCAATGTGTGCAACAAGCCCTTCACACGCAAGGAGCATTTGATCAATCATATGTCACGTTGTCACACCGGCGATCGTCCCTTCACCTGCGAGACATGCGGCAAATCGTTCCCACTCAAGGGCAATCTCTTGTTCCATCAGCGCAGCCACACCAAGGGCCAGGAATGCGAACGTCCATTTGCCTGCGAGAAGTGCCCCAAgaatttcatatgcaaagGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCAGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCATTCGGCGACGACCACAATGCACACCATACAGCAGATAACAGCGGGCGCTGCAGCGGCTGGCGCTGGTGCCGTCCAGCTGACGCCCGGCCTGGTGCCGCTCGTCACCAGCACGCTCATCTCCCATAATGCCCAGCAGtcgcagaagcaacagcagcaggtggctgctgcagttgctgcccagCAGCAGGCGGCAGCCGCAGCGGCCGCCCAACAGCAGGCAGCCGCAGCGGCACAGCAGcaagcggcggcggcagcagcacaccagcagcatcagcaacaggtggctgcacagcagcagcaacaacagcagcaggcagcagttgctgcacatcagcagcagcaacagcaactacagcagcaacagttgctgcaatTGTCCATACAGCAGGCggcgcatcatcatcagcagcaacagcagcagcatcaacagcaacaacagcagcagcaacaacaacagcagcaacagcaacatcatccaCAGCAACAGGCGCATCCACAGGCgccgccacagcagcagcagcaacaacagcaacagccaccgCCTCAGGTGCCCATTGCATTGATAAGTGATCCAAGCGCGCTGGCTCGTGCCGCCATGCAGTTGCAGCATCTGCCCACAAATGTAGAACAGCATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTISLGGPPPLPGNKSDHKEDGSKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAVSTNNAAVAAVMASANAAAAAAAAASAAATAQQQQQQQQQQQQQQQQQQQQAPATSTNAGTQQGSATVTTTSSSGSNGGNGGNNNATTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRCHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISHNAQQSQKQQQQVAAAVAAQQQAAAAAAAQQQAAAAAQQQAAAAAAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQQQQQHQQQQQQQQQQQQQQQHHPQQQAHPQAPPQQQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00479608;
80% Identity: -