Dsta000011.1
Basic Information
- Insect
- Drosophila stalkeri
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035047405.1
- Location
- JAWNPR010000013.1:1107-4625[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-32 1.3e-28 100.3 5.8 94 170 157 233 150 236 0.96 2 3 1.2e-33 3.8e-30 105.3 1.8 200 299 235 330 233 331 0.98 3 3 0.38 1.2e+03 -1.4 0.7 209 237 349 376 334 378 0.64
Sequence Information
- Coding Sequence
- ATGCGCGCCAAAGCACATTCGCTAACCTTCACTATAATCATGCATCTTCATCAGAAGCATCACCATGCAGGACCGCAGGCTTGGAGTAATTCGACAGCAGTTTTGGCCCATGACGGCATGAAAACTGTTGCCCGAGCTGCACGAAAATGTATAATCTGCTGCAGACTCCGGTCTCTTCTAGTCGAGAATATAATGGCGGACTTGCCTAAAGATCGTGCACAGTGCTTACCAACATTCAAAGTCACTGGGATGGACTATTGTGGTCCTTTTTACTACAACGCTACTAACTTTGAACATCGCATTGAAGTTCATAGCTTCTGCATCAGCAACCGCTTTGATTGGAAGTTCATACCTTCACGTTCGCCACATTCCGGTGGCCTATGGGAAGCAGCAGTGAAGACCGCCGTAAGACAATTATATCACACTGTAGGATCAGCACTTCTTGGCTTCGACGAACTGCGCACCTTGGACGTCGAAGAACGTTTTCGAAAAGCCATGATAACGAATGCTCAACTAGACAATGATCGTTCATCACAAACCTATGAAGTTAAACTACTTAAAGATAAAAGTGAAGCGATGCAAGAATCTCTCGCTCAATTGCAACGcgaatttaaaaacaaactcCGCGATTGCAGTGCCCTTAAACGCAGCTTGGATCGCACAACACTTGAATTAAACCTAGTGCAAGGTCAACTAATAATGATGAAGCGCGCTCTGGTCAGTGTTGAAAACGCCAATGTGCTTTCAAGTGTTCAGGGTTCTCTTGatgTAAGAATTAACAAGTTTACAGAGGAAAAGCAGCGGCTTCTTAACGAAATGCAAAATCTGCGTGAACAGCTAGATGCTTTTAAAAATGAAGGCAGGCCAGGGCGAGACAGTCTACTAAGTGACTTTTTAGGGTACGATGATGACTATGATGCTCAGAgagaatcaaataaaatcatatcggattataaatataaactacaaAAAGCTGAACAGGAAATCGCAAGTCTTCAGGCAAACTTGGCGCGCTCAGAGACTCAAGTTATACGTTATAAAAGTACTGCTGAAGCTGCTGAAAAATCTGAGGCTGAACTGAAAGTAGAAAGACGTAAACTGCAACGTGAACACCGGGAGATTTTAGAACATTTATGA
- Protein Sequence
- MRAKAHSLTFTIIMHLHQKHHHAGPQAWSNSTAVLAHDGMKTVARAARKCIICCRLRSLLVENIMADLPKDRAQCLPTFKVTGMDYCGPFYYNATNFEHRIEVHSFCISNRFDWKFIPSRSPHSGGLWEAAVKTAVRQLYHTVGSALLGFDELRTLDVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSEAMQESLAQLQREFKNKLRDCSALKRSLDRTTLELNLVQGQLIMMKRALVSVENANVLSSVQGSLDVRINKFTEEKQRLLNEMQNLREQLDAFKNEGRPGRDSLLSDFLGYDDDYDAQRESNKIISDYKYKLQKAEQEIASLQANLARSETQVIRYKSTAEAAEKSEAELKVERRKLQREHREILEHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00599574;
- 90% Identity
- iTF_00599574;
- 80% Identity
- -