Dsec004955.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila seclusa
Gene Symbol
sip1
Assembly
GCA_035043575.1
Location
JAWNMX010000261.1:3427516-3430236[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.3e-90 6.4e-86 288.3 16.1 3 275 431 707 429 707 0.97
2 2 0.28 2.5e+03 -2.2 0.0 246 269 723 746 714 762 0.49

Sequence Information

Coding Sequence
ATGTCGGATAACGAATATGAACGCTTTGAAATAACGGACTATGATTTGGACAACGAGTTCAATATAAATCGACCACGTCGTCGTCAAACCAAACATCAGCAAATATACGGCATTTGGGCCGATGACAGCGATAATGAGAGCGAGGGAGAAGCCAGCGGTCGACGTGGCGGTAGGCGTGGCCttggtggcggcggtgccGGCAAAGCAAAGGACTACACGGCGCCCGTTAATTTCGTTGCCGGGGGCATTCAACAAGCTGGCAAACAgccaaagaagaagcagctggAGGAAGGCTCCACCAAAGATGAGGCTGCTTCTGGTGAGTCGGAGGACAGCGACGGCAACGAGCCACGTCCATCGTTTGGGGGAAAGCAGCCGCAGGTGATGCACAACAACGAGGATTACAGCTCGAATAGCTCCGATGGTGCAGATAATAAgagggagcagcagcagcagatgcggTCTCGGAACATTGCTGGACTGCGGCACAAGTCGCACATTGCAAGCGGTCGGAATGTTGGTGCCTGGGAGCAACATACGCGTGGCATTGGcgccaagctgctgctgcagatgggCTATGAGCCGGGCAAGGGATTGGGCAAGGATCTGCAGGGCATCCAGCAGCCGGTGCAAGCGCATGTGCGCAAGGGCAGAGGTGCCATCGGTGCCTACGGACCCGAGACGGCAGCCAGTATTGGCGGCCAGGCAAAGCCACCGAAAGAAGACGACGACATCAAGGAGGCCAGGGAGTTCAAGGAGCAGCTGACCAAGTGGAAGAAAGTCGGCGTTGAGCCGCGAGAGAAGTCTGGCAAACAACAGCGCTACTACTACAAATCGGTTGAGGAAGTCATTGCCAAGAGTCTGAAGGACAACCACTTGCTACCCGAGAAGCTGGCCAAGCAGCTGGGCAATGTGCCCGTCATCGACATGACCGGGCCGGAGCGACGCGTCCTCAGTGGCTATCATGCCTTGGCCCAGAGCAAGATCACGCCCGAGGAGACACTCTACGATGAGCAGCTTCCGTCGGGCGGAGAAAAGAGCTCACCGATTAGTGTGTTTAGCATGCCGGAACTGGCGCACAATATGTCGCTGCTGGTTAGCCAATGCGAGCAGGAGATCATTGACATCGACAAGGCGAAGCGGGAGGGCCATGATCTGTATGCATCGCTCGAGCAcgagcatcagcagctgctggaacTGGTAAGTCTGGAGCGCAATCACATGAACACTTTGGAGCAGGTGCTCGCTCGTGTCGATCATCTCAGCGAGAATCCGGACTTGACAATGTCGCAGGCGGAGGAGCTATTTCTCGACCTGCAGCGCGACTATCCCGCCGAGTTTGAGGAGTTCGGCATGGAGGATATGGCTGGTGGCGTCATTGCTCCATTGCTGCGGCGGGAACTAGCTGATTGGCGCCCGCTGGAGAAGCCCATGCAGCCGGTGGAGATGATAAAGCGTTGGCGCAACATATTGCAAAAGGATGAGGATCAGGCGCCGGCATcgttggagcagctgcagctgcggcaaTCCCGCAACGTTTTCGATCCGTACTCCTCGCTCATCTGGGTCGGGGTGATGCCGTCGATTCGTACGAGCGCACTCAACTGGCAGCCCAAGGAGCATGAATCGATGGCCGCCTTGCTGGACGCATGGGCGCCAGTATTGCCCACGTGGGTGTTGGACTCGGTGCTGGAGAAACTGGTGCTGACCCGGCTAAAGATTGGCGTCCGCGACTGGGATCCATTGACGGATACGGTGCCCATTCACATTTGGATTTTGCCCTGGCATGGACTGCTGGGTGAGAAGCTGGAGGAGTCTGTCTATCCGCAGATACGCAGCAAACTGGGTGTGGCATTGGAGGCGTGGTCACCACAAGATCGATCCGCGCGGGCCATGCTCACGCCGTGGCAGACGGCGTTTCCCGAGGAACAGTTGCTGCAGTTCCTGCTGCGTCACATTATACCCAAGCTGCAGGCGGTGCTCGCCGAGTTCATCATCAATCCGCTGCAGCAGGACTTGGAGCTGTGGCATCAGGTGTGGGAATGGCACGAACTAATACCAGCCGCCCACATGGCCCAGCTGCTCGACAAGTATTTCTTTCCACGCTGGATGCAGGTGCTCGTCATGTGGCTGAATCAGTCGCCGGACTTTGCCGAAATCTCACGCTGGTATGCCGGCTGGAAAAGCATGTTCAGCGAGGCCATCTTACGCGAGCCCTGCATCAAGGAGCATCTGCGTCGCGCCCTCGACATGCTGCACCGCGCCACGGATGCGGTCCTCCAACCCACTTCGGCCCCACCACCGCCCATGCCACCAGCGCCCGCCCCTGTGCTTCTCGCTCCCGTAATGCTCATAGATGTGGCTGCGCCCGCTCAGCTTGAGTTCAAGGAGCTCGTCTCGCAGAAATGCGCCGAACTGGGCATCATATTCGCCCCATTGCCAGGACGACGCGAACTGGGCAAACAGaTTTATCGCGTGGGGAAACTATTCTGTTACATCGATCGCAATGTTTGCATGCTCAGCGATGTCAGCTTTCAGAGCTGGCAACCTGTGGCCCTCAATCAGCTCCTGGAGCGCGCCCAAACTGGCCTCATCTAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNESEGEASGRRGGRRGLGGGGAGKAKDYTAPVNFVAGGIQQAGKQPKKKQLEEGSTKDEAASGESEDSDGNEPRPSFGGKQPQVMHNNEDYSSNSSDGADNKREQQQQMRSRNIAGLRHKSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPPKEDDDIKEAREFKEQLTKWKKVGVEPREKSGKQQRYYYKSVEEVIAKSLKDNHLLPEKLAKQLGNVPVIDMTGPERRVLSGYHALAQSKITPEETLYDEQLPSGGEKSSPISVFSMPELAHNMSLLVSQCEQEIIDIDKAKREGHDLYASLEHEHQQLLELVSLERNHMNTLEQVLARVDHLSENPDLTMSQAEELFLDLQRDYPAEFEEFGMEDMAGGVIAPLLRRELADWRPLEKPMQPVEMIKRWRNILQKDEDQAPASLEQLQLRQSRNVFDPYSSLIWVGVMPSIRTSALNWQPKEHESMAALLDAWAPVLPTWVLDSVLEKLVLTRLKIGVRDWDPLTDTVPIHIWILPWHGLLGEKLEESVYPQIRSKLGVALEAWSPQDRSARAMLTPWQTAFPEEQLLQFLLRHIIPKLQAVLAEFIINPLQQDLELWHQVWEWHELIPAAHMAQLLDKYFFPRWMQVLVMWLNQSPDFAEISRWYAGWKSMFSEAILREPCIKEHLRRALDMLHRATDAVLQPTSAPPPPMPPAPAPVLLAPVMLIDVAAPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDVSFQSWQPVALNQLLERAQTGLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00513447;
90% Identity
iTF_00482221;
80% Identity
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