Dsec012480.1
Basic Information
- Insect
- Drosophila seclusa
- Gene Symbol
- bab2
- Assembly
- GCA_035043575.1
- Location
- JAWNMX010000683.1:1606176-1608062[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-18 1.1e-14 53.8 0.0 1 43 59 102 59 104 0.95 2 2 0.0073 12 5.7 0.1 29 42 385 399 385 401 0.92
Sequence Information
- Coding Sequence
- ATGATTGAGACGAGCGGACACGCCTGGATGGGCGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAACAGAATCTGGTGCAACAGTTGCGATTTCGCGAACGCGGTCCTCTCAAATCCTGGCGACCCGAGGCCATGGCCGAGGCCATATTCAGTGTACTGAAAGAGGGACTCTCCCTCTCGCAGGCTGCACGCAAATACGATATACCCTATCCGACATTTGTGCTCTACGCCAATCGCGTGCACAACATGCTGGGACCCTCGCTCGATGGCGGCACCGATCCCAGGCCCAAGGCACGCGGCCGACCCCAGCGCATTCTGCTGGGCATGTGGCCCGAGGAGCTCATACGCAGCGTCATCAAGGCGGTCGTCTTCCGCGACTATCGCGAGATCAAGGAGGACATCAATGCGCATCAGTATGCCAATGGACAGGCACATGGCGCGCACTTTGGCTCTGGCAACTCGTCGGCAGCTGCCAATGGCTATCATAGTGCAGTCAAAATGGCGGCACAGAACGCTGCACTTGCCCCGCCCGACGGCAGCAATGCGCTGAGCAGCATGACGGAGACCCTCCGCCGCCAGATACtctcccagcagcagcagcagcagcaacagcagcagcagcagcagcaatcgccgCATGTGCAATCGATGAATATGTACAAGTCGCCTGCGTACTTGCAACGCTCCGAGATTGAGGATCAGGTGTCTgccgcagcggcagcagcagccaagcacCAGCAGAGGGAGCGACGTGGCAGCGAGAATCTGCCCGATTTGAGTGCACTGGGTCTGATGGGATTGCCGGGCCTGAATGTGATGCCATCGCAGCAGGCGCCACATCAGCGTggaggcggtggtggtggcggcggtggcggggCAGGTAACGGGGGCAGTGCAGGCGCTGCCATGCATCCCAGTGCCGCCAGCTACGCCCGAGAGTTGTCGCGGGAGCGTGAACGAGAGCGCGAGATGTCCCGGGACCGGGAGCTGAAGGAGGCGATGCATGCCCGCCAGTATGGCAATCAGTCGCGTGGCTCCAACTCCTCCGGCGGCAGCAAATCGGCAGCTGGATCCTCGAGTCGTCCGGGTGCCGCATCCCCCTACTCCACGCTCTATGCGAAGCATGCCAAGGAGCATCCCAATTATGCGTACAACAAACGCTTCCTGGAGTCTCTGCCGGCGGGCATTGACTTCGAGGCGATTGCCAATGGGCTGCTGCACAAGTCGGTCAACAAGAGTCCGCGCTTCGAGGACTTCTTTCCTGGCCAGGACATGAGTGAGTTGTTCGCCAGCGCCAGTGATGCAGTTGTCGGAGCTGGTGCTGGCTCCGCctcggcagcagcggcggcagcagcagcagccgctgcctaTGCGCCGGCAGCGTTGCGCGAATCGCCGCTGATGAAGATCaagttggagcagcagcatcaggcgACAGAGTTGCCGCACGAGGATTGA
- Protein Sequence
- MIETSGHAWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDINAHQYANGQAHGAHFGSGNSSAAANGYHSAVKMAAQNAALAPPDGSNALSSMTETLRRQILSQQQQQQQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAAAAKHQQRERRGSENLPDLSALGLMGLPGLNVMPSQQAPHQRGGGGGGGGGGAGNGGSAGAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSGGSKSAAGSSSRPGAASPYSTLYAKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLHKSVNKSPRFEDFFPGQDMSELFASASDAVVGAGAGSASAAAAAAAAAAAYAPAALRESPLMKIKLEQQHQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560179; iTF_00597281; iTF_00500229; iTF_00498791; iTF_00543665; iTF_00606984; iTF_00482153; iTF_00538154; iTF_00573970; iTF_00558582; iTF_00609801; iTF_00619766; iTF_00495031; iTF_00548727; iTF_00566711; iTF_00497304; iTF_00521272; iTF_00496517; iTF_00525048; iTF_00522092; iTF_00508252; iTF_00511196; iTF_00552226; iTF_00595869; iTF_00582882; iTF_00485781; iTF_00616119; iTF_00501725; iTF_00513379; iTF_00557128; iTF_00498072; iTF_00518362; iTF_00576266; iTF_00570319; iTF_00576983; iTF_00499507; iTF_00542361; iTF_00564573; iTF_00552958; iTF_00527968; iTF_00535232;
- 90% Identity
- iTF_00573970;
- 80% Identity
- -