Basic Information

Insect: Drosophila sechellia
Gene Symbol: lolal
Assembly: GCA_004382195.1
Location: NC:6778823-6825233[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-11 2.1e-08 33.4 0.0 1 38 716 754 716 759 0.89

2 4 4.7e-14 9.1e-11 40.9 0.1 2 39 771 808 770 811 0.94

3 4 1.1e-17 2.1e-14 52.5 0.0 1 45 825 870 825 870 0.98

4 4 1.1e-19 2.2e-16 58.9 0.0 1 43 877 920 877 921 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-11	2.1e-08	33.4	0.0	1	38	716	754	716	759	0.89
2	4	4.7e-14	9.1e-11	40.9	0.1	2	39	771	808	770	811	0.94
3	4	1.1e-17	2.1e-14	52.5	0.0	1	45	825	870	825	870	0.98
4	4	1.1e-19	2.2e-16	58.9	0.0	1	43	877	920	877	921	0.97

Sequence Information

Coding Sequence: ATGGCAGCGGTTCGAGGACATCAGTATTTCAGTCTGCGCTGGAATAACTACCAAAACACGATGACGTCAGTGTTCCAGCAGCTGCGCGAGGATCTCTCCTTCGTGGACGTCACCCTGTCCTGCGAGCACGGATCCCTCAAGGCGCACAAGGTCGTCCTGTCCGCCTGTTCGACGTATTTCCAAAAACTGCTGCTCGAGAATCCGTGCAAACATCCCACAATCATCCTTCCCGCCGACATTATCTTCACCGACCTGAAAACCATCATCGATTTTGTTTATCGTGGGGAAATCGACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTAAAGATCAAGGGACTCTGCGAAACCGCCGAGAACGCGGATGACCTGAACGACGCGGCCACTGCAACGATCACAGTTTCAGAGAACATACAGCAGGCGGTCGTTGGCAATATAGTGAATGCGACCATAGTTCCCGGAGCTCCGTCGCCCTCCttggaacagcagcagcaacagcagcaggcgcaggagcagcaccagcaacagcaggtgcatgcccagcagcaacagcagcagcagcaaataaaCGCTGCCCTGCTTACGCAACACGGAGTGTCCAGCGGAAGTGTTTCTCTTTCCGGGCAATTGCTGAGCTCCTCggccagcggcagcagcggaAGTTTAGCCGGCGCACAGCAGGCTACACAGACGCCATCCGGTTTGCAGCCGACGCCGCGCAAGTCTCGACTAAAGCGCTCCAAATCGCCGGATTTGTCATCGAGCGGAGGAGCAGGAAGCTCTGGAGGCTCGAGTAGCGGCTCAACGCAGCAACAACCGCAGCCggcgcaccaccaccacccgcAGACCATTCTCATCCAGGGCCAAAATCCGAATTCCATTGTGAGCCTTCAGCAGACGGCCGACGGCAATTACATACCAGTTTCGGGTTCTGGCGACGATTCAGACGCCGAGGACCACGAGCACGAACACAGCCACGGACACGGGCACGGGCACGGAGGACATCCGCACGGACACGGTCACAGCCACGATCACAGTCACGATCACGAGCACGAACATAAGCCGAACAAGATCTGCAAGACCGAGCACTCGGTGGCCTCGCCGGCGTCCAATTCATCCAGCGCCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACATCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACCCCAGTCACCGTCACGGAGCACGTCGATCTGTCCTGCAACCCTAGCACGGACACGCGCGACCTATCAAATACCACCGAACCGCTCGATATAGACAATCATCTGGCTCAGCAGATCCATCGACTCGATCAGTCCCCCATGCACTCGATATCGCACCACCATACAGGCGATGAAAGCAACTCGAATCTGGTGCAGCATATCAAGAGCGAAGTGATCGAGGCCAAGCACCTGGCTGCCCAGCACCATGCACTTAGCCAGGCCCAACAGCAACATGCCCATCACCAGgcccaccagcagcaccaacagcatcagcaacagcagcatcaacaacagcagcaacatcttcATGCTCAGCAGCTCTTGGCCCAGAgtcagttgcagcagcaacagcaacagcagcagcagcaacaccaccagcagcaacaacaggcagccgccgcagcagctggTGTGCATGGCCAGCATGGGGGACACGTGACGCACGCCGACATCGGCGGTGCCACTGTCATGGAGATTGATCCGAGCCAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCCGGGCATATGGACATGTATAACTCGGATACGAGTGAGGATTCGATGATGATCGCCAACGGTTCGCCGCACGATCAGAAGGAACCGCACTATACGAATTTGGATCAGCAGCACGGTCTGggtggcagcgtttgcggccCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCATGAGTGGTGGGGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGCATGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCAAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATTGCTCGGCGCGAAGGCATCCGCCTTGCGGCGCCCTTCAATGCCGCCCCGACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAACACTTCGGTGCAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGTAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGCGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTGGCGCTGTTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGtTGCATATGTTACAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCTCGGCGCAGCAGGGTCCGCCGACGCCGCAGCACATGCAGCAGCACGTGGTGcacatgcaacagcagcagcagcagcaacagcaacagcagtcgcCCCATCCGGGCCACCATCCGCAGCATATGCAGCAGGACGTGGTTACATCGAGCAGCCAGGTGGTGCAcagccaacagcagcagcagcttcagcAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQQAQEQHQQQQVHAQQQQQQQQINAALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGAQQATQTPSGLQPTPRKSRLKRSKSPDLSSSGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGSGDDSDAEDHEHEHSHGHGHGHGGHPHGHGHSHDHSHDHEHEHKPNKICKTEHSVASPASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAQHHALSQAQQQHAHHQAHQQHQQHQQQQHQQQQQHLHAQQLLAQSQLQQQQQQQQQQHHQQQQQAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQQGPPTPQHMQQHVVHMQQQQQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00619072;
90% Identity: iTF_00578452;
80% Identity: iTF_00592469;