Dsec007194.1
Basic Information
- Insect
- Drosophila sechellia
- Gene Symbol
- retn
- Assembly
- GCA_004382195.1
- Location
- NC:19624877-19647159[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-26 6.4e-23 80.6 0.0 2 89 303 388 302 388 0.96 2 2 3.3 6.4e+03 -2.8 0.2 15 15 544 544 520 581 0.52
Sequence Information
- Coding Sequence
- ATGCAACTGCGAGTGCACCCTACTATGGACTGTAGCGGTCGTTCAACCAGCAATATTGAACGCGATTCCGATCTGGGGGACGATTTGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGCGACTCCGTGGATGGGGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCAGCCCGCCTGAGTCACACAGTTTCCGGCGGCGGAGGAAGCTTCGCCAGCCCCGAACCGCAGACCGAGCTGCCCCTGAGCCATCACCATCAACTGCCGCCGAATCATCCGCTCAATGCTCTGGGCAGCTTCATGGGCATCGGCGGACTACACAGCATTCCAAATCTCCAGCACAGCGACGTGCTCGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGCCTGATGGTGAGTGTTAAGGAACAGGACTACGCTGCCGCAGCACATGCCGCTGCTTTCGGGGCCAACATGCTGCCCACGACGATCAGCTCGGGCTTCCCACTGCCCCACAACTCGGTGGCCTTTGGCCACGTCACATCGGCGCCCAGCGGTGGGAATGGGAGCAGCTACAACGGAGGCACCACCCCCACAAACAGCTCCAATAGCAACGCGACCACCAATGGAGGCGGCACCGCCGGACCTGGAGGAACAGGAGGATCGggcggcggaggagcaggaggaggtggaggcggcggaggaggcgcAGGAGTGGGTGGCCAACAGTTCTCGTTCGCATCCCCCACAGCAGCGCCGAGCGGCAAAGAAGCCCGCCACTTTGCAGCCAATTCCGCATCGAACTCGTCGACGTCCAGCGAGGCTTCCAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTTCAAACAAGTCAGACAGCTCTACGAAATCAATGATGACCCCAAGCGCAAAGAGTTTCTGGACGACTTGTTCTCGTTTATGCAAAAGCGCGGAACTCCGATCAATCGGCTGCCGATCATGGCCAAGTCGGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATAGCCCGCGGCGGCTTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCACCTGCCCTCCAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGGAATCGCCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCGATGACGCCCATTTCACGACCCTCCCTGCCCGGTGGCATGCAGCAAATGTCGCCGCTGGCGCTGGTCACCCATGCCGCGGTGGCCAACAATCAGCAGGCTCaggccgccgctgccgccgccgcagctCATCATCGCCTGATGGGCGCTCCCGCCTTTGGCCAGATGCCCAACCTGGTCAAGCAGGAGATCGAGAGCCGGATGATGGAGTATCTGCAGCTGATCCAGGCCAAGAAGGAGCAGGGCATGCCGCCAGTCCTGGGCGCCAACCAtccccaccagcagcagcactcacagcagcagcagcatcaccaccagcagcagcagcagtcgcagcagcaacaccacctgcagcagcagcgccagcGGTCGCAGAGTCCGGATCTGAGCAAGCACGAGGCACTCAGTGCTCAGGTGGCCCTGTGGCACATgtaccacaacaacaacagcccaCCGGGATCGGCACACACCTCGCCGCAGCAACGCGAAGCCCTGAACCTGTCCGACTCGCCTCCAAATCTCACAAATATCAAGCGGGAACGCGAACGGGAACCCACTCCAGAGCCCGTGGACCAGGATGACAAATTTGTGGACCAGCCGCCTCCAGCGAAGCGCGTGGGCAGTGGCCTCCTTCCGCCCGGCTTTCCCGCCAACTTTTACCTGAATCCACACAACATGGCCGCTGTGGCAGCAGCTGCGGGATTCCATCACCCATCCATGGGCCACCAGCAGGATGCCGCATCCGAGGGCGAGCCAGAGGACGACTACGCCCACGACGAGCACAATACCACAGGCAACTCGTCCTCCATGCACGACGACAGCGAACCGCAGCAGATGAACggacaccaccaccaccaccaccaccagacCCACCATCTGGACAAGTCCGATGACTCGGCCATTGAGAACTCACCCACCACATCGACCACCACCGGTGGGTCGGTGGGACATCGTCACAGTTCGCCCGTTTCCACCAAGAAAAAGGGCGGCTCCAAGCCCCAGAGTGGAGGGAAGGATCTGCCGGCCGAGGATAAGGATGCGTCGTCCAGTGGCAAGCTCAATCCCCTCGAGACGCTGAGCCTGCTGTCCGGAATGCAGTTTCAAGTGGCAAGGAATGGAACTGGCGATAACGGCGAACCGCAGCTGATTGTCAATCTGGAGCTTAATGGCATCAAGTACTCGGGAGTGCTGGTGGCCAATGTGCCGCTGTCCGAAAGCGAGACAAGGACGAGCTCACCCTGCCACGCCGAAGCACCGACAGccgaggaggagaaggatGAGGAGGAGCCGAAAGCCGCTGAAGAGGAATCGCATCGATCGCCAGTTAAACAGGAGAACGAGGATGCCGACCAGGACATGGAGGGCAGCGAAGTCCTTCTGAACGGAGGCGCCTcggcggtgggtggtgctgctgctggtgtgggtgtgggtgtgccCCTGCTCAAGGATGCCGTGGTCAGCTAG
- Protein Sequence
- MQLRVHPTMDCSGRSTSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVSGGGGSFASPEPQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMVSVKEQDYAAAAHAAAFGANMLPTTISSGFPLPHNSVAFGHVTSAPSGGNGSSYNGGTTPTNSSNSNATTNGGGTAGPGGTGGSGGGGAGGGGGGGGGAGVGGQQFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGANHPHQQQHSQQQQHHHQQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVDQDDKFVDQPPPAKRVGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHPSMGHQQDAASEGEPEDDYAHDEHNTTGNSSSMHDDSEPQQMNGHHHHHHHQTHHLDKSDDSAIENSPTTSTTTGGSVGHRHSSPVSTKKKGGSKPQSGGKDLPAEDKDASSSGKLNPLETLSLLSGMQFQVARNGTGDNGEPQLIVNLELNGIKYSGVLVANVPLSESETRTSSPCHAEAPTAEEEKDEEEPKAAEEESHRSPVKQENEDADQDMEGSEVLLNGGASAVGGAAAGVGVGVPLLKDAVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00527091;
- 90% Identity
- iTF_00505186;
- 80% Identity
- -