Basic Information

Insect: Drosophila rhopaloa
Gene Symbol: -
Assembly: GCA_018152115.1
Location: JAECXI010000195.1:50737-54321[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.1 7.3 7.2 2.6 2 23 320 342 319 342 0.94

2 18 0.79 57 4.4 0.1 1 23 349 374 349 374 0.90

3 18 0.031 2.3 8.8 2.2 2 23 385 406 385 406 0.93

4 18 0.087 6.3 7.4 0.1 3 23 447 468 446 468 0.95

5 18 0.0039 0.29 11.6 0.3 3 23 476 496 474 496 0.95

6 18 0.0089 0.65 10.5 0.4 1 23 504 527 504 527 0.98

7 18 0.00053 0.038 14.4 0.3 2 23 532 553 531 553 0.97

8 18 0.062 4.5 7.9 0.1 1 19 561 579 561 582 0.93

9 18 0.0014 0.1 13.0 0.4 1 22 601 622 601 625 0.91

10 18 0.32 23 5.6 1.4 3 21 632 650 632 651 0.90

11 18 0.011 0.8 10.2 0.9 1 23 670 695 670 695 0.96

12 18 0.045 3.3 8.3 1.5 2 23 713 735 712 735 0.93

13 18 0.001 0.076 13.4 0.2 2 23 741 763 740 763 0.92

14 18 0.016 1.2 9.7 0.2 2 23 767 789 766 789 0.95

15 18 7.4e-05 0.0053 17.1 1.0 1 23 795 817 795 817 0.98

16 18 0.0026 0.19 12.2 0.9 1 23 821 844 821 844 0.94

17 18 0.00024 0.017 15.5 1.2 1 23 850 873 850 873 0.97

18 18 2e-05 0.0015 18.8 0.2 3 23 879 905 877 905 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.1	7.3	7.2	2.6	2	23	320	342	319	342	0.94
2	18	0.79	57	4.4	0.1	1	23	349	374	349	374	0.90
3	18	0.031	2.3	8.8	2.2	2	23	385	406	385	406	0.93
4	18	0.087	6.3	7.4	0.1	3	23	447	468	446	468	0.95
5	18	0.0039	0.29	11.6	0.3	3	23	476	496	474	496	0.95
6	18	0.0089	0.65	10.5	0.4	1	23	504	527	504	527	0.98
7	18	0.00053	0.038	14.4	0.3	2	23	532	553	531	553	0.97
8	18	0.062	4.5	7.9	0.1	1	19	561	579	561	582	0.93
9	18	0.0014	0.1	13.0	0.4	1	22	601	622	601	625	0.91
10	18	0.32	23	5.6	1.4	3	21	632	650	632	651	0.90
11	18	0.011	0.8	10.2	0.9	1	23	670	695	670	695	0.96
12	18	0.045	3.3	8.3	1.5	2	23	713	735	712	735	0.93
13	18	0.001	0.076	13.4	0.2	2	23	741	763	740	763	0.92
14	18	0.016	1.2	9.7	0.2	2	23	767	789	766	789	0.95
15	18	7.4e-05	0.0053	17.1	1.0	1	23	795	817	795	817	0.98
16	18	0.0026	0.19	12.2	0.9	1	23	821	844	821	844	0.94
17	18	0.00024	0.017	15.5	1.2	1	23	850	873	850	873	0.97
18	18	2e-05	0.0015	18.8	0.2	3	23	879	905	877	905	0.84

Sequence Information

Coding Sequence: ATGTCGGAAAACGCAAAAAATAATAGCTGTCTGCATTGCTCCGTATTCAGTACGAAATACCAGTACCAGGAGATATTCGATGAGTTTGGAATCGAGCTGGGTCTCCAATCCTTGCTGGCCAAGCACTACCAGGTCGATGTCGTACCCGATCCCCAGAAAAAGCAGCTTCTGTGCGAAGTGTGTGTCAATAATCTCATCCGCCTGTTCGACATCGATGAATTGGAGCGGGAAAGGGATGCAGCCAAGACAGTGGACCAGAATGCGGCGCCCAAGCATCCCATTATCATCACCGATGTCGAGGCATCGCCACCTGCAGCGAAGCCCGCTAAGAAGGCTACGCCACCAAAGCCCCTGGCAAAGGTCCTGCGCCCTGTACCCATAGCTCCCACCCGGGAACCAAGTGCCCGCATCAACAAAGGAATTCCTGCGCCCCAGTTAACCCTTGGTTCATCTAAGCCTCCTGCCCGATCCAAGGATCCTCCACAGAAAGGTCCTCCCCTCCAAATTGAAACTCCAAAAGATGCGGATCAAGAGCAGATAAGTGTCCTGATACAAAACATCCTGGACGAAGATGAGACCGTCGTTGAAGAGGTAGCCAGTGAAGTTACCCAGATCGCCGAGGAATCGGAAAACCCAGCCGAAATTGTTCTGCTGAACAACGAACCCGAGGCTGAACCTGTTCTAGATGAGGAAGATGTATACATATATGAGCACGAAGATATACTGGACCCAGATTTGGAGGATGTAAAGGACAAATCAATGGTTCGTCCACCTAGATTAGTAGTCCAACCTGAGGAGAGCCAAAGCGAAGGAGAGGACGACGATGGCGAGGCCAGCAATGTGGTTCTATTCAACTTTGTTGATATCAAGGAAAAGGATGACATTGAGGACATTTCTGAGTACTTGTCAACTGTGGTGAAAACCAGCTTCGAAAAGCTTACATTTGAGTGGAGTACAGTGTGCAAACACTGCTCCTTAAAGTGTCCCACATTTGATAGTCTTTTAAGTCACATTGTTAAGGCCCACAAAACCCGGAGAGATGTCTACCAGTGTCCCATTGAAGGTTGCAGCAAGGAGCTAAAGGGTCGCCAGTTCCTGGCCATGCATCTGGTTCTTTTGCACGCTCCCGTGGCTGAGATTCCAATATATGGCAGCTGCCCGGAATGTAAAATGACATTCTCCAACATTTTGCAGTACAACAAACACTCTTGCGCCCATGTCATCAAAAAGAAACGGGGTGTTCGCTCGTTTTGTGAAATGTGCTCCTTGGAGTTTCCATCATGGAAACGATTCAGTTTCCACAACCAATTCCATCTGGAGAAGCATAGACCTCGCGCCTGCTTCGTCTGCGATTTTGCCAGCACCAACATCGATGACCTTTTCCAGCATTTAAATTATGCCCATGAGCCAGTGGGCACCTTATTTTGCGACCTTTGCGACCGGACTTTCCGTGATCCGGCCGTGTTCATGGAGCACAATAAGTCGCATGCCAATGTGAGCAGTACAACCTATTCCTGCGGCGAGTGCTTGGCACACTTTGAGTCACGAGGGCGATTGAATGGGCACATGAGAGTCATGCATGGCAGCGTGGTAAGCTGCGAGCTCTGCTCCCGAGAGTTTGCCACCGAAGCCACCTACAACATTCACATGAAGAAGCACTTGATCATTGAGCGAGATGTGCACGTGTGCAGCAAATGTGGCCTGGTGAGCGACAGCCGCGAAACACTACTTGCCCATGCGGACTCCCCGACATCTGCCTGTTTTGGCACTAAAATATATATGGAACTGCTTCGTGATGCTTACGTCTGCGAATACTGCTCATCGTACTTCAAAGAAAAGGAAAATCTTCAAGCACATCGAGAGTCAGGCGTTCATAAGGACGGGTTGTACTGGTGTCAGCCCTGCGGTAAGGACTTCCCCCACATGAAACTGTACCGCCACCACCTGCGCAACTATCAGAAACTGCGCTCGGATTTGACGCATCGTAAGCTTGAGATTTGTGCCTTTTATATGTGCGATCAGAAGAACTGCTCGGAGGCATATGTAAACTGGAACTCCTTGTACACACACAAGCGACGAACCCACGAATCTTCAAATAAGCAGGCGGAGAAAACCGCCAAGAGTATCCAAGAATGGATTTGCCAATTTTGTTCAAAGGAGTGCCGCTCAAAGATGTCCTTGTCTGTTCATGTGGCAAGGAGCCACAATAATGACAATGTGGTTTGTCCTTTATGCAAAGCCTCATATAAAAGCCAGGATGCTCTAGCCAAGCACCATGCCTATTGGCACGAACCCATCGAGTGCCCTCAATGTTTTAAAATCGTTAAAAATCGTCGTAATTATGACACTCATGTGAATGTGGTGCATTCGAATACAAAGCGCTACTCCTGCGGTGTCTGTGAGAAAGGATTCTATCACAGAAGTGAAATGGAAGCTCATCAGAAGCTCCATGGTCAGTCTTATAGCTGCGAGCAGTGTAGCTTCACCACCAGGAACAAGAAGTCCCTATCTGTTCATATTCTGGGTCAGCACTACAAGCGCTTCGCTTTTGAGTGCAAGGCGTGCAAGAAGAGGTTTGGACGCCGTCAGGGCTTGAGTACCCACATGCAACGAGCACATGGTTACAAGTATATGTGCCGTGCTTACTTCGAGGGCGGTTGTGGACGCACTTTTGTAAACAGTTCCCAGCTGAATGTACATGTGCGAAAGGTACACAAAGGTGTCATATTCCTGCAGGAGGATCTGGTCGAAGAGGACGAATATGTCAGCGACGGGCCATCCACATCTAAGAGGCGATGCATTCGTATCAACGAATACAATATTGAGTTTATAGCAGACGGAGATGAAGGAGATGATCCGGATGGGATAGAAATGGAAGAAGGTGACGGGGATGAGGAAGAATTTGTCGACGACGTACCAGATCAAGATACCAAACATTGA
Protein Sequence: MSENAKNNSCLHCSVFSTKYQYQEIFDEFGIELGLQSLLAKHYQVDVVPDPQKKQLLCEVCVNNLIRLFDIDELERERDAAKTVDQNAAPKHPIIITDVEASPPAAKPAKKATPPKPLAKVLRPVPIAPTREPSARINKGIPAPQLTLGSSKPPARSKDPPQKGPPLQIETPKDADQEQISVLIQNILDEDETVVEEVASEVTQIAEESENPAEIVLLNNEPEAEPVLDEEDVYIYEHEDILDPDLEDVKDKSMVRPPRLVVQPEESQSEGEDDDGEASNVVLFNFVDIKEKDDIEDISEYLSTVVKTSFEKLTFEWSTVCKHCSLKCPTFDSLLSHIVKAHKTRRDVYQCPIEGCSKELKGRQFLAMHLVLLHAPVAEIPIYGSCPECKMTFSNILQYNKHSCAHVIKKKRGVRSFCEMCSLEFPSWKRFSFHNQFHLEKHRPRACFVCDFASTNIDDLFQHLNYAHEPVGTLFCDLCDRTFRDPAVFMEHNKSHANVSSTTYSCGECLAHFESRGRLNGHMRVMHGSVVSCELCSREFATEATYNIHMKKHLIIERDVHVCSKCGLVSDSRETLLAHADSPTSACFGTKIYMELLRDAYVCEYCSSYFKEKENLQAHRESGVHKDGLYWCQPCGKDFPHMKLYRHHLRNYQKLRSDLTHRKLEICAFYMCDQKNCSEAYVNWNSLYTHKRRTHESSNKQAEKTAKSIQEWICQFCSKECRSKMSLSVHVARSHNNDNVVCPLCKASYKSQDALAKHHAYWHEPIECPQCFKIVKNRRNYDTHVNVVHSNTKRYSCGVCEKGFYHRSEMEAHQKLHGQSYSCEQCSFTTRNKKSLSVHILGQHYKRFAFECKACKKRFGRRQGLSTHMQRAHGYKYMCRAYFEGGCGRTFVNSSQLNVHVRKVHKGVIFLQEDLVEEDEYVSDGPSTSKRRCIRINEYNIEFIADGDEGDDPDGIEMEEGDGDEEEFVDDVPDQDTKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00515724;
90% Identity: iTF_00529709;
80% Identity: -